Revision as of 11:10, 12 July 2017

Zoom URL

https://stanford.zoom.us/j/679970729

Viewing annotations in GPAD format
- Noctua ->Workbenches->Annotation Preview
- Noctua ->Model->Export GPAD
- Noctua->Jenkins (http://build.berkeleybop.org/job/export-lego-to-gpad-sparql/lastSuccessfulBuild/artifact/legacy/gpad)

Handling evidence properly
- Complex model resolution to specify gene products along with evidence.
  - evidence test: transferases - protein localization - differentiation
  - Notch signaling - Part 1
  - Karen's concerns regarding evidence usage and mapping
Handling groups as output in the GPAD file.
Creating biological processes to generate regulation annotations.
- http://noctua.berkeleybop.org/editor/graph/gomodel:586fc17a00000366
Generating a tabular interface
Filtering GPAD annotations
- Regulation annotations when a named class exists
  - http://noctua.berkeleybop.org/editor/graph/gomodel:586fc17a00000366
- Causal annotations to molecular functions
  - http://noctua.berkeleybop.org/editor/graph/gomodel:55c3ef4c00000001
Curators should evaluate their workflow for areas where we can improve efficiency - high priority
Import existing CC and BP annotations
Documentation

On call: David H, Harold, Jim, Karen, Kevin, Kimberly, Pascale, Sabrina, Sage, Seth, Terry
Regrets: Chris

Hoping to port over a spreadsheet-like interface from Inca project
- Being used currently for editing DOS-DPs
- Needs to be able to communicate with minerva
Part of the AGR project
Three-week time frame for Noctua development
Idea is to have a more P2GO-like, user friendly annotation interface

@@ Line 38: / Line 38: @@
 === Update on Proposal for a Tabular Editing Interface ===
 *Hoping to port over a spreadsheet-like interface from Inca project
+**Being used currently for editing DOS-DPs
+**Needs to be able to communicate with minerva
 *Part of the AGR project
-*Three-week time frame
+*Three-week time frame for Noctua development
 *Idea is to have a more P2GO-like, user friendly annotation interface