GO-CAM July 12th, 2017: Difference between revisions
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**Needs to be able to communicate with minerva | **Needs to be able to communicate with minerva | ||
*Part of the AGR project | *Part of the AGR project | ||
*Three-week time frame for Noctua development | **Three-week time frame for Noctua development | ||
*Idea is to have a more P2GO-like, user friendly, intuitive annotation interface | *Idea is to have a more P2GO-like, user friendly, intuitive annotation interface | ||
Revision as of 11:11, 12 July 2017
Zoom URL
https://stanford.zoom.us/j/679970729
Agenda
Update on Proposal for a Tabular Editing Interface
https://github.com/geneontology/noctua/issues/461
Priority list
- Viewing annotations in GPAD format
- Noctua ->Workbenches->Annotation Preview
- Noctua ->Model->Export GPAD
- Noctua->Jenkins (http://build.berkeleybop.org/job/export-lego-to-gpad-sparql/lastSuccessfulBuild/artifact/legacy/gpad)
- Handling evidence properly
- Complex model resolution to specify gene products along with evidence.
- evidence test: transferases - protein localization - differentiation
- Notch signaling - Part 1
- Karen's concerns regarding evidence usage and mapping
- Complex model resolution to specify gene products along with evidence.
- Handling groups as output in the GPAD file.
- Creating biological processes to generate regulation annotations.
- Generating a tabular interface
- Filtering GPAD annotations
- Regulation annotations when a named class exists
- Causal annotations to molecular functions
- Curators should evaluate their workflow for areas where we can improve efficiency - high priority
- Import existing CC and BP annotations
- Documentation
Minutes
- On call: David H, Harold, Jim, Karen, Kevin, Kimberly, Pascale, Sabrina, Sage, Seth, Stacia, Terry
- Regrets: Chris
Software Updates
Update on Proposal for a Tabular Editing Interface
- Hoping to port over a spreadsheet-like interface from Inca project
- Being used currently for editing DOS-DPs
- Needs to be able to communicate with minerva
- Part of the AGR project
- Three-week time frame for Noctua development
- Idea is to have a more P2GO-like, user friendly, intuitive annotation interface