GO-CAM July 12th, 2017

Zoom URL

https://stanford.zoom.us/j/679970729

Agenda

Update on Proposal for a Tabular Editing Interface

https://github.com/geneontology/noctua/issues/461

Priority list

• Viewing annotations in GPAD format
  • Noctua ->Workbenches->Annotation Preview
  • Noctua ->Model->Export GPAD
  • Noctua->Jenkins (http://build.berkeleybop.org/job/export-lego-to-gpad-sparql/lastSuccessfulBuild/artifact/legacy/gpad)

• Handling evidence properly
  • Complex model resolution to specify gene products along with evidence.
    • evidence test: transferases - protein localization - differentiation
    • Notch signaling - Part 1
    • Karen's concerns regarding evidence usage and mapping
• Handling groups as output in the GPAD file.
• Creating biological processes to generate regulation annotations.
  • http://noctua.berkeleybop.org/editor/graph/gomodel:586fc17a00000366
• Generating a tabular interface
• Filtering GPAD annotations
  • Regulation annotations when a named class exists
    • http://noctua.berkeleybop.org/editor/graph/gomodel:586fc17a00000366
  • Causal annotations to molecular functions
    • http://noctua.berkeleybop.org/editor/graph/gomodel:55c3ef4c00000001
• Curators should evaluate their workflow for areas where we can improve efficiency - high priority
• Import existing CC and BP annotations
• Documentation

Minutes

• On call: David H, Harold, Jim, Karen, Kevin, Kimberly, Pascale, Sabrina, Sage, Seth, Stacia, Terry
• Regrets: Chris

Software Updates

Update on Proposal for a Tabular Editing Interface

• Hoping to port over a spreadsheet-like interface from IncaTools project
  • Being used currently for editing DOS-DPs
  • Needs to be able to communicate with minerva
• Simple design idea is to provide columns that match the fields of a GO annotation
• Part of the AGR project
  • Three-week time frame for Noctua development
• Idea is to have a more P2GO-like, user friendly, intuitive annotation interface
• Will need input from curators familiar with the P2GO interface