GO-CAM May 24th, 2017: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
Line 30: Line 30:
**First version is available for use  
**First version is available for use  
**See Annotation preview under Workbenches menu
**See Annotation preview under Workbenches menu
**Will live update as curators edit their models


[[Category: LEGO]]
[[Category: LEGO]]

Revision as of 11:16, 24 May 2017

Bluejeans URL

https://bluejeans.com/969313231

Agenda

Recent Software Updates

  • New fast reasoner: Arachne
  • Export GPAD menu option now using reasoner (ie Jim's code; Heiko's is retired)
  • Readable GPAD ("labelified-GPAD") progress

Review of github Tickets

Minutes

  • On call: Chris, Karen, Kimberly, Moni, Pascale, Seth, Suzi

Software Updates

  • Updated relations available in Noctua (e.g. directly positively regulates)
    • Also updated existing models
  • Incorporated SynGO models files generated by David OS
    • JSON -> OWL
  • New reasoner
    • Incorporated Jim B.'s Arachne reasoner into Noctua
    • Much faster than ELK
    • Curators can now annotate with the reasoner on and this should catch mistakes
    • Ultimately working towards real-time error checking
    • If using undone/redo DON'T USE THE REASONER
    • Removed GAF output option from Noctua
  • Human readable GPAD output
    • First version is available for use
    • See Annotation preview under Workbenches menu
    • Will live update as curators edit their models