GO-CAM Noctua Call 2018-05-09

Meeting URL

• https://stanford.zoom.us/j/679970729

Agenda

Progress Towards Noctua 1.0 Release

• Review of github tickets for Noctua 1.0

Simple Annoton Editor

• Review tickets on github tracker
• Planning to integrate code with Noctua later this week
• Karen and Kimberly have tested many features
• A few small things left to address for 1.0
• Other issues to discuss for the next release
  • Editing
  • Model searching
  • Protein complexes
  • TPC integration
  • More real-time error checks

Derived GPAD Output

• Causal relations in GPAD output
• Annotation extensions to include
• Results of syntax check from Tony S. at UniProt
  • Qualifier list
  • Annotation extensions white list
  • Obsolete GO IDs
  • IPI annotations: With/From vs has_input AE
  • Evidence codes that don't map to three-letter GO codes
  • Do not annotate or Do not manually annotate subsets

Annotation SOPs

• https://github.com/geneontology/noctua/issues/552

Annotation Templates

• We need to give curators templates of common biological processes so we can get consistent annotation
• Examples:
  • Transcription
• Do we need a separate working group for this?

Minutes

• On call: Chris, Dustin, Edith, Harold, Jim, Kevin, Kimberly, Laurent-Philipe, Rob, Sage, Seth, Stacia, Suzi A., Suzi L., Tremayne