https://wiki.geneontology.org/index.php?title=GO-CAM_Noctua_Call_2018-05-09&feed=atom&action=history
GO-CAM Noctua Call 2018-05-09 - Revision history
2024-03-29T10:22:10Z
Revision history for this page on the wiki
MediaWiki 1.40.0
https://wiki.geneontology.org/index.php?title=GO-CAM_Noctua_Call_2018-05-09&diff=74841&oldid=prev
Pascale at 09:46, 16 April 2019
2019-04-16T09:46:06Z
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 05:46, 16 April 2019</td>
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Pascale
https://wiki.geneontology.org/index.php?title=GO-CAM_Noctua_Call_2018-05-09&diff=68781&oldid=prev
Vanaukenk: /* Simple Annoton Editor */
2018-05-09T15:38:16Z
<p><span dir="auto"><span class="autocomment">Simple Annoton Editor</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:38, 9 May 2018</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Review Schedule of Talks for GOC Meeting ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Review Schedule of Talks for GOC Meeting ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>== <del style="font-weight: bold; text-decoration: none;">Simple Annoton Editor </del>==</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>== <ins style="font-weight: bold; text-decoration: none;">Noctua Form </ins>==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*Review tickets on [https://github.com/geneontology/simple-annoton-editor/issues github tracker]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*Review tickets on [https://github.com/geneontology/simple-annoton-editor/issues github tracker]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*Planning to integrate code with Noctua later this week</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*Planning to integrate code with Noctua later this week</div></td></tr>
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Vanaukenk
https://wiki.geneontology.org/index.php?title=GO-CAM_Noctua_Call_2018-05-09&diff=68780&oldid=prev
Ben.good: /* Minutes */
2018-05-09T15:26:30Z
<p><span dir="auto"><span class="autocomment">Minutes</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:26, 9 May 2018</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>= Minutes =</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>= Minutes =</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>*On call: Barbara, Dustin, Edith, Harold, Jim, Karen, Kimberly, Pascale, Rob, Seth, Stacia, Tremayne</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>*On call: Barbara, Dustin, Edith, Harold, Jim, Karen, Kimberly, Pascale, Rob, Seth, Stacia, Tremayne<ins style="font-weight: bold; text-decoration: none;">, Ben</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category: Annotation Working Group]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category: Annotation Working Group]]</div></td></tr>
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Ben.good
https://wiki.geneontology.org/index.php?title=GO-CAM_Noctua_Call_2018-05-09&diff=68779&oldid=prev
Stacia: /* Minutes */
2018-05-09T15:13:36Z
<p><span dir="auto"><span class="autocomment">Minutes</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:13, 9 May 2018</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>= Minutes =</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>= Minutes =</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>*On call: Barbara, Dustin, Edith, Harold, Jim, Karen, Kimberly, Pascale, Rob, Seth, Tremayne</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>*On call: Barbara, Dustin, Edith, Harold, Jim, Karen, Kimberly, Pascale, Rob, Seth<ins style="font-weight: bold; text-decoration: none;">, Stacia</ins>, Tremayne</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category: Annotation Working Group]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category: Annotation Working Group]]</div></td></tr>
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Stacia
https://wiki.geneontology.org/index.php?title=GO-CAM_Noctua_Call_2018-05-09&diff=68778&oldid=prev
Vanaukenk: /* Minutes */
2018-05-09T15:02:38Z
<p><span dir="auto"><span class="autocomment">Minutes</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:02, 9 May 2018</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>= Minutes =</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>= Minutes =</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>*On call: <del style="font-weight: bold; text-decoration: none;">Chris</del>, Dustin, Edith, Harold, Jim, <del style="font-weight: bold; text-decoration: none;">Kevin</del>, Kimberly, <del style="font-weight: bold; text-decoration: none;">Laurent-Philipe</del>, Rob<del style="font-weight: bold; text-decoration: none;">, Sage</del>, Seth<del style="font-weight: bold; text-decoration: none;">, Stacia, Suzi A., Suzi L.</del>, Tremayne </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>*On call: <ins style="font-weight: bold; text-decoration: none;">Barbara</ins>, Dustin, Edith, Harold, Jim, <ins style="font-weight: bold; text-decoration: none;">Karen</ins>, Kimberly, <ins style="font-weight: bold; text-decoration: none;">Pascale</ins>, Rob, Seth, Tremayne</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category: Annotation Working Group]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category: Annotation Working Group]]</div></td></tr>
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Vanaukenk
https://wiki.geneontology.org/index.php?title=GO-CAM_Noctua_Call_2018-05-09&diff=68765&oldid=prev
Vanaukenk at 00:51, 9 May 2018
2018-05-09T00:51:36Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 20:51, 8 May 2018</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Progress Towards Noctua 1.0 Release ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Progress Towards Noctua 1.0 Release ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[https://github.com/orgs/geneontology/projects/6 Review of github tickets for Noctua 1.0]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[https://github.com/orgs/geneontology/projects/6 Review of github tickets for Noctua 1.0]</div></td></tr>
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<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">== Review Schedule of Talks for GOC Meeting ==</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Simple Annoton Editor ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Simple Annoton Editor ==</div></td></tr>
</table>
Vanaukenk
https://wiki.geneontology.org/index.php?title=GO-CAM_Noctua_Call_2018-05-09&diff=68764&oldid=prev
Vanaukenk: Created page with "= Meeting URL = *https://stanford.zoom.us/j/679970729 = Agenda = == Progress Towards Noctua 1.0 Release == *[https://github.com/orgs/geneontology/projects/6 Review of github..."
2018-05-09T00:47:35Z
<p>Created page with "= Meeting URL = *https://stanford.zoom.us/j/679970729 = Agenda = == Progress Towards Noctua 1.0 Release == *[https://github.com/orgs/geneontology/projects/6 Review of github..."</p>
<p><b>New page</b></p><div>= Meeting URL =<br />
*https://stanford.zoom.us/j/679970729<br />
<br />
= Agenda =<br />
== Progress Towards Noctua 1.0 Release ==<br />
*[https://github.com/orgs/geneontology/projects/6 Review of github tickets for Noctua 1.0]<br />
<br />
== Simple Annoton Editor ==<br />
*Review tickets on [https://github.com/geneontology/simple-annoton-editor/issues github tracker]<br />
*Planning to integrate code with Noctua later this week<br />
*Karen and Kimberly have tested many features<br />
*A few small things left to address for 1.0<br />
*Other issues to discuss for the next release<br />
**Editing<br />
**Model searching<br />
**Protein complexes<br />
**TPC integration<br />
**More real-time error checks<br />
<br />
== Derived GPAD Output ==<br />
*[https://github.com/geneontology/minerva/issues/109 Causal relations in GPAD output]<br />
*Annotation extensions to include<br />
*Results of syntax check from Tony S. at UniProt<br />
**Qualifier list<br />
**Annotation extensions white list<br />
**Obsolete GO IDs<br />
**IPI annotations: With/From vs has_input AE<br />
**Evidence codes that don't map to three-letter GO codes<br />
**Do not annotate or Do not manually annotate subsets<br />
<br />
== Annotation SOPs ==<br />
*https://github.com/geneontology/noctua/issues/552<br />
<br />
== Annotation Templates ==<br />
*We need to give curators templates of common biological processes so we can get consistent annotation<br />
*Examples:<br />
**Transcription<br />
*Do we need a separate working group for this?<br />
<br />
= Minutes =<br />
*On call: Chris, Dustin, Edith, Harold, Jim, Kevin, Kimberly, Laurent-Philipe, Rob, Sage, Seth, Stacia, Suzi A., Suzi L., Tremayne <br />
<br />
[[Category: Annotation Working Group]]</div>
Vanaukenk