GO-CAM November 22, 2017
Zoom URL
https://stanford.zoom.us/j/679970729
Agenda
Updates/Discussion on 1.0 Release Milestones
Annotation Attribution in GPAD Output Files
- noctua github ticket #458 - Attribution with GO-CAM exports to GOC annotation files
- noctua github ticket #502 - providedBy should be used in GPAD export
- go-site github ticket #453 - All Noctua curators should have "updated" metadata associated in the YAML file (including group and URI)
- Issue summary: we want to make sure that, in the GPAD files, attribution in the 'Assigned By' field is correctly populated with a curator's annotation group
- Is this a good time to clean house wrt older or test models?
- Step 1: Curators need to have entries in the groups field of the users.yaml file
- Some groups still need to review their users.yaml (i.e. they are missing groups and also sometimes even missing orcids):
- USC
- UniProt (SIB and EBI)
- PomBase
- FlyBase
- SynGO
- Xenbase
- Groups that are okay:
- BHF-UCL
- dictyBase
- MGI
- SGD
- TAIR
- WB
- Zfin
- Some groups still need to review their users.yaml (i.e. they are missing groups and also sometimes even missing orcids):
- Step 2: Convert any remaining GOC:nn identifiers to orcids
- Step 3: Determine if, for any models, curators would not want their default groups to be used to populate providedBy value
- Step 3: Populate providedBy value with appropriate group for each evidence statement 'Contributedby' a given curator
- Step 1: Curators need to have entries in the groups field of the users.yaml file
- Question: What is the significance of the model-level providedBy and how is it populated?
Display user and group labels from minerva metadata
Allow negation in Noctua and SAE and in GPAD export
export-lego-to-gpad-sparql should collate by MOD
MInutes
- On call: Barbara, Chris, Edith, Harold, Jim, Kevin, Kimberly, Pascale, Paul T., Sabrina, Seth, Suzi
Agenda
Updates/Discussion on 1.0 Release Milestones
Annotation Attribution in GPAD Output Files
Display user and group labels from minerva metadata
- Changed from 1.0 Milestone to wishlist as this impacts the contributor display on the landing page and is not essential for curation or GPAD output