GO-CAM Research: Difference between revisions
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= Preamble = | |||
GO-CAM models are based on the semantic annotation and combination of biological facts. Each fact or statement corresponds to a standard GO Annotation, that is a Gene associated to a GO-Term. To read more about standard GO annotations, <span class="plainlinks">[http://geneontology.org/page/go-annotations click here]</span>. | |||
GO-CAM relies on the <span class="plainlinks">[http://geneontology.org/page/ontology-documentation Gene Ontology]</span> to define a controlled set of vocabulary and enable curators to create structured biological facts, also called annotations. GO-CAM combines those single biological facts to describe and define larger biological processes. Each biological fact can be written as.a triplet <subject - predicate - object> and a model, as a collection of triplets, can be stored in TTL file. | |||
The curators use the platform <span class="plainlinks">[http://noctua.geneontology.org Noctua]</span> to create these GO-CAM models. Noctua is the front-end, currently written with <span class="plainlinks">[https://github.com/janl/mustache.js/ mustache]</span> and <span class="plainlinks">[https://github.com/kltm/pup-tent pup-tent], and allows for the creation of workbenches (end-user UI to access and manipulate the models in different ways) | |||
= First Steps = | = First Steps = | ||
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= Additional Resources = | = Additional Resources = | ||
- [[Biological Pathways as GO-CAMs]] | |||
Revision as of 11:28, 10 July 2018
Preamble
GO-CAM models are based on the semantic annotation and combination of biological facts. Each fact or statement corresponds to a standard GO Annotation, that is a Gene associated to a GO-Term. To read more about standard GO annotations, click here.
GO-CAM relies on the Gene Ontology to define a controlled set of vocabulary and enable curators to create structured biological facts, also called annotations. GO-CAM combines those single biological facts to describe and define larger biological processes. Each biological fact can be written as.a triplet <subject - predicate - object> and a model, as a collection of triplets, can be stored in TTL file.
The curators use the platform Noctua to create these GO-CAM models. Noctua is the front-end, currently written with mustache and pup-tent, and allows for the creation of workbenches (end-user UI to access and manipulate the models in different ways)
First Steps
This documentation is not yet available, please come back later