GO-CAM Sept 27, 2017: Difference between revisions
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= Minutes = | = Minutes = | ||
*On call: Harold, Kimberly, Pascale, Sabrina, Sage, Terry | *On call: Chris, David H., Edith, Harold, Jim, Karen, Kevin, Kimberly, Pascale, Paul T., Rob, Sabrina, Sage, Seth, Stacia, Terry | ||
== GPAD Outputs == | |||
*Salient features: | |||
**Suppression of MF root annotations | |||
***What about inferred annotations when there's a root MF annotation? | |||
**Causal chains | |||
***causally upstream of or within o causally upstream of or within -> acts upstream of or within | |||
***part of o causally upstream of or within -> causally upstream of or within - this causal chain was missing | |||
*ACTION ITEM: on a future GO-CAM call, review the Inference Explanations for some models | |||
== Attribution == | |||
*Attribution will be according to the group selected by the curator | |||
*Groups are available from the drop-down menu to the right of the curator's name | |||
*Group xref will then be populated in the Assigned_by field of the GPAD output, with curator's orcid in the Annotation Properties field | |||
== Simple Annoton Editor == | |||
*Allows curators to add annotons in a table-like interface | |||
*Annotations are automatically added to the graphical interface with appropriate evidence and relations | |||
**Note that default relations are used: enabled_by, occurs_in, and part_of | |||
*Editor enhancements to come: | |||
**Ability to add basic set of annotation extensions, e.g. has_input for an MF | |||
**Ability to just add a CC annotation and get the resulting part_of annotation in the graphical interface | |||
[[Category: | |||
[[Category:GO-CAM]] |
Latest revision as of 05:47, 16 April 2019
Zoom URL
https://stanford.zoom.us/j/679970729
Agenda
GPAD Outputs
GPAD missing annotations via 'causally upstream of'?
TEST: causally upstream of - KRC
Attribution
Attribution with GO-CAM exports to GOC annotation files
Simple Annoton Editor
dealing with blank MF in the simple annoton editor
Extend form to include standard GO-CAM model fields
Bare MF annotation should generate part-of triples
Minutes
- On call: Chris, David H., Edith, Harold, Jim, Karen, Kevin, Kimberly, Pascale, Paul T., Rob, Sabrina, Sage, Seth, Stacia, Terry
GPAD Outputs
- Salient features:
- Suppression of MF root annotations
- What about inferred annotations when there's a root MF annotation?
- Causal chains
- causally upstream of or within o causally upstream of or within -> acts upstream of or within
- part of o causally upstream of or within -> causally upstream of or within - this causal chain was missing
- Suppression of MF root annotations
- ACTION ITEM: on a future GO-CAM call, review the Inference Explanations for some models
Attribution
- Attribution will be according to the group selected by the curator
- Groups are available from the drop-down menu to the right of the curator's name
- Group xref will then be populated in the Assigned_by field of the GPAD output, with curator's orcid in the Annotation Properties field
Simple Annoton Editor
- Allows curators to add annotons in a table-like interface
- Annotations are automatically added to the graphical interface with appropriate evidence and relations
- Note that default relations are used: enabled_by, occurs_in, and part_of
- Editor enhancements to come:
- Ability to add basic set of annotation extensions, e.g. has_input for an MF
- Ability to just add a CC annotation and get the resulting part_of annotation in the graphical interface