GO-CAM Sept 27, 2017
Zoom URL
https://stanford.zoom.us/j/679970729
Agenda
GPAD Outputs
GPAD missing annotations via 'causally upstream of'?
TEST: causally upstream of - KRC
Attribution
Attribution with GO-CAM exports to GOC annotation files
Simple Annoton Editor
dealing with blank MF in the simple annoton editor
Extend form to include standard GO-CAM model fields
Bare MF annotation should generate part-of triples
Minutes
- On call: Chris, David H., Edith, Harold, Jim, Karen, Kevin, Kimberly, Pascale, Paul T., Rob, Sabrina, Sage, Seth, Stacia, Terry
GPAD Outputs
- Salient features:
- Suppression of MF root annotations
- What about inferred annotations when there's a root MF annotation?
- Causal chains
- causally upstream of or within o causally upstream of or within -> acts upstream of or within
- part of o causally upstream of or within -> causally upstream of or within - this causal chain was missing
- Suppression of MF root annotations
- ACTION ITEM: on a future GO-CAM call, review the Inference Explanations for some models
Attribution
- Attribution will be according to the group selected by the curator
- Groups are available from the drop-down menu to the right of the curator's name
- Group xref will then be populated in the Assigned_by field of the GPAD output, with curator's orcid in the Annotation Properties field
Simple Annoton Editor
- Allows curators to add annotons in a table-like interface
- Annotations are automatically added to the graphical interface with appropriate evidence and relations
- Note that default relations are used: enabled_by, occurs_in, and part_of
- Editor enhancements to come:
- Ability to add basic set of annotation extensions, e.g. has_input for an MF
- Ability to just add a CC annotation and get the resulting part_of annotation in the graphical interface