GO-CAM Working Group Call 2018-11-20

Agenda

• Meeting URL: https://stanford.zoom.us/j/976175422

Progress Reports

• 2018 progress reports are due Wednesday, December 19th
• Format for individual annotation groups will be reviewed for continued relevancy (hasn't changed since 2008)
• For working groups, folder for 2018 reports, with template, and 2017 reports for reference is on the Google drive

Transcription

• We'll discuss the clocka transcription model and annotating direct vs indirect regulation of transcription.
• http://noctua.geneontology.org/editor/graph/gomodel:5a5fc23a00000137
• Curation guidelines: http://wiki.geneontology.org/index.php/Noctua
  • http://wiki.geneontology.org/index.php/Noctua#Transcription
  • Linked from Learn More on Noctua landing page
  • Also link from Help?
• Existing models referencing 'regulation of transcription':
  • Search production models for GO terms: http://geneontology.org/go-cam
  • Action item: MGI, WB, and Zfin - review models for consistency with guidelines

What is the extent of a GO-CAM model?

• Think about the process being studied and how the work described in a given paper fits into the overall knowledge of that process.
• Using that as a guide, decide what annotations are best included in the model, and what annotations might be captured in a separate model until more information is known.

GO-CAM GPAD - Pipeline

• Currently, GPAD files are available here:
  • http://build.berkeleybop.org/job/export-lego-to-gpad-sparql/lastSuccessfulBuild/artifact/legacy/
• Check with Seth on status of:
  • Port build.berkeleybop.org export-lego-to-legacy to give new home to GO-CAM pick-ups
• Proposed new (transitional) location for Noctua GO-CAM pick up:
  • noctua_RESOURCE.gpad.gz" in http://snapshot.geneontology.org/products/annotations/

Minutes

• On call: Chris M, David, Dmitry, Dustin, Giulia, Harold, Helen, Kimberly, Laurent-Philippe, Li, Liz, Marie-Claire, Paul T., Penelope, Petra, Sabrina, Seth, Stacia, Suzi A, Suzi L