GO-CAM Working Group Call 2018-11-20
Agenda
- Meeting URL: https://stanford.zoom.us/j/976175422
Progress Reports
- 2018 progress reports are due Wednesday, December 19th
- Format for individual annotation groups will be reviewed for continued relevancy (hasn't changed since 2008)
- For working groups, folder for 2018 reports, with template, and 2017 reports for reference is on the Google drive
Transcription
- We'll discuss the clocka transcription model and annotating direct vs indirect regulation of transcription.
- http://noctua.geneontology.org/editor/graph/gomodel:5a5fc23a00000137
- Curation guidelines: http://wiki.geneontology.org/index.php/Noctua
- http://wiki.geneontology.org/index.php/Noctua#Transcription
- Will link from Help on Noctua landing page
- Existing models referencing 'regulation of transcription':
- Search production models for GO terms: https://geneontology.cloud/home
- Action item: MGI, WB, and Zfin - review models for consistency with guidelines
What is the extent of a GO-CAM model?
- Think about the process being studied and how the work described in a given paper fits into the overall knowledge of that process.
- Using that as a guide, decide what annotations are best included in the model, and what annotations might be captured in a separate model until more information is known.
GO-CAM GPAD - Pipeline
- Currently, GPAD files are available here:
- Check with Seth on status of:
Minutes
- On call: