GO 18th Consortium Meeting Minutes Day 2: Difference between revisions

Revision as of 09:15, 24 September 2007

Monday 24th September 2007, Princeton University, NJ

1. Plans for immediate future (SL) a. regulation b. cross products

2. Database report a. schema changes b. production

3. GA files (mike)

4. OBO-Edit (john)

5. Evidence codes (ma)

Overview of cross products by CJM.

…

Cp results in scratch directory.

…

Discussion gene_ontology_edit.obo file vs original file confused.

JDR – add obo version number to the filename. Then use original name as release version of file.

MA/Mike – change ‘edit’ in curators version to ‘pre_release’ to better describe it’s use. Orig file updated nightly by Stanford.

CJM: need to take versioning a little more seriously – impossible to replicate analyses. How do we cite what version of the GO we use?

Michelle – do we hide pre release file?

Cjm: no, culture of using the latest file.

Michelle: However, orig file updated daily anyway.

DB: not straightforward to find when people took data

@@ Line 18: / Line 18: @@
 Overview of cross products by CJM.
+Overview of cross products by CJM.
+…
+Cp results in scratch directory.
+…
+Discussion gene_ontology_edit.obo file vs original file confused.
+JDR – add obo version number to the filename. Then use original name as release version of file.
+MA/Mike – change ‘edit’ in curators version to ‘pre_release’ to better describe it’s use.
+Orig file updated nightly by Stanford.
+CJM: need to take versioning a little more seriously – impossible to replicate analyses. How do we cite what version of the GO we use?
+Michelle – do we hide pre release file?
+Cjm: no, culture of using the latest file.
+Michelle: However, orig file updated daily anyway.
+DB: not straightforward to find when people took data