GO Consortium Meeting 2007: Difference between revisions
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#* The lagtime between when the protein sequences of a newly sequenced and annotated organism are published, and when they make it into UniProt. For example, even now only ~10% of 27,855 arabidopsis protein sequences are contained in Swiss-Prot. For the final release (version 5) of arabidopsis, 306 proteins (~1%) are available in Swiss-Prot and 374 in TrEMBL. Older arabidopsis sequences are found in TrEMBL, but fully 1/3 of the sequences found in the first release have changed over the life of the project. | #* The lagtime between when the protein sequences of a newly sequenced and annotated organism are published, and when they make it into UniProt. For example, even now only ~10% of 27,855 arabidopsis protein sequences are contained in Swiss-Prot. For the final release (version 5) of arabidopsis, 306 proteins (~1%) are available in Swiss-Prot and 374 in TrEMBL. Older arabidopsis sequences are found in TrEMBL, but fully 1/3 of the sequences found in the first release have changed over the life of the project. | ||
#* GOST needs to use the precise sequences, as supplied by the submitting group | #* GOST needs to use the precise sequences, as supplied by the submitting group | ||
#Handling multiple identifiers for gene products and sequences | |||
== Venue == | == Venue == | ||
Revision as of 20:43, 6 October 2006
Topics
Please add items below that you think need to be presented. When possible, please put your request in priority rank order:
- The issue of using the GO_REF vs extension of the evidence codes to amplify upon the method that is used.
- gp2protein file:
- The lagtime between when the protein sequences of a newly sequenced and annotated organism are published, and when they make it into UniProt. For example, even now only ~10% of 27,855 arabidopsis protein sequences are contained in Swiss-Prot. For the final release (version 5) of arabidopsis, 306 proteins (~1%) are available in Swiss-Prot and 374 in TrEMBL. Older arabidopsis sequences are found in TrEMBL, but fully 1/3 of the sequences found in the first release have changed over the life of the project.
- GOST needs to use the precise sequences, as supplied by the submitting group
- Handling multiple identifiers for gene products and sequences
Venue
Jesus College Cambridge, UK