GO Consortium Meeting 2007: Difference between revisions

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== Topics ==
== Topics ==


Please add items below that you think need to be presented. When possible, please put your request in priority rank order:
Please add items below that you think need to be presented. We are not -yet- putting these in any particular order or time, right now let us just collect the topics we need to address while we are together.
 
# The issue of using the GO_REF vs extension of the evidence codes to amplify upon the method that is used.  
# The issue of using the GO_REF vs extension of the evidence codes to amplify upon the method that is used.  
# gp2protein file:  
# gp2protein file:  
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#* GOST needs to use the precise sequences, as supplied by the submitting group
#* GOST needs to use the precise sequences, as supplied by the submitting group
#Handling multiple identifiers for gene products and sequences
#Handling multiple identifiers for gene products and sequences
#Evaluation of project tracking methods


== Venue ==
== Venue ==

Revision as of 15:37, 8 October 2006

Topics

Please add items below that you think need to be presented. We are not -yet- putting these in any particular order or time, right now let us just collect the topics we need to address while we are together.

  1. The issue of using the GO_REF vs extension of the evidence codes to amplify upon the method that is used.
  2. gp2protein file:
    • The lagtime between when the protein sequences of a newly sequenced and annotated organism are published, and when they make it into UniProt. For example, even now only ~10% of 27,855 arabidopsis protein sequences are contained in Swiss-Prot. For the final release (version 5) of arabidopsis, 306 proteins (~1%) are available in Swiss-Prot and 374 in TrEMBL. Older arabidopsis sequences are found in TrEMBL, but fully 1/3 of the sequences found in the first release have changed over the life of the project.
    • GOST needs to use the precise sequences, as supplied by the submitting group
  3. Handling multiple identifiers for gene products and sequences
  4. Evaluation of project tracking methods

Venue

 Jesus College
 Cambridge, UK