GO Consortium Meeting 2007: Difference between revisions
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== Topics == | == Topics == | ||
=== GO Team Reports === | |||
Listed with potential people to provide the summaries | |||
# Reference Genomes - Rex&Karen | |||
# Ontology Content - David&Midori | |||
# Ontology & Software - Chris&Ben/Mike | |||
#* Includes OBO-Edit working group report | |||
# Annotation outreach - Jen&Michelle/Simon | |||
# User Advocacy - Eurie&Jane | |||
#* Includes AmiGO working group report | |||
# Operations - Suzi | |||
# Publications | |||
=== Issues to be addressed === | |||
Please add items below that you think need to be presented. We are not -yet- putting these in any particular order or time, we're just collecting the topics we need to address while we are together. | Please add items below that you think need to be presented. We are not -yet- putting these in any particular order or time, we're just collecting the topics we need to address while we are together. | ||
# The issue of using the GO_REF vs extension of the evidence codes to amplify upon the method that is used. | # The issue of using the GO_REF vs extension of the evidence codes to amplify upon the method that is used. | ||
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#Handling multiple identifiers for gene products and sequences | #Handling multiple identifiers for gene products and sequences | ||
#Evaluation of project tracking methods | #Evaluation of project tracking methods | ||
#More?? Claim some? Explain some? | |||
=== New proposals === | |||
#Protein Family based annotation tool - Suzi | |||
#Term history tracking capability - John/Chris/and OBO-Edit group | |||
== Venue == | == Venue == |
Revision as of 18:52, 9 October 2006
Topics
GO Team Reports
Listed with potential people to provide the summaries
- Reference Genomes - Rex&Karen
- Ontology Content - David&Midori
- Ontology & Software - Chris&Ben/Mike
- Includes OBO-Edit working group report
- Annotation outreach - Jen&Michelle/Simon
- User Advocacy - Eurie&Jane
- Includes AmiGO working group report
- Operations - Suzi
- Publications
Issues to be addressed
Please add items below that you think need to be presented. We are not -yet- putting these in any particular order or time, we're just collecting the topics we need to address while we are together.
- The issue of using the GO_REF vs extension of the evidence codes to amplify upon the method that is used.
- gp2protein file:
- The lagtime between when the protein sequences of a newly sequenced and annotated organism are published, and when they make it into UniProt. For example, even now only ~10% of 27,855 arabidopsis protein sequences are contained in Swiss-Prot. For the final release (version 5) of arabidopsis, 306 proteins (~1%) are available in Swiss-Prot and 374 in TrEMBL. Older arabidopsis sequences are found in TrEMBL, but fully 1/3 of the sequences found in the first release have changed over the life of the project.
- GOST needs to use the precise sequences, as supplied by the submitting group
- Handling multiple identifiers for gene products and sequences
- Evaluation of project tracking methods
- More?? Claim some? Explain some?
New proposals
- Protein Family based annotation tool - Suzi
- Term history tracking capability - John/Chris/and OBO-Edit group
Venue
Click here to register for this meeting. Please do this by October 31st Jesus College Jesus Lane, Cambridge, CB5 8BL, UK Cambridge, UK