GO Consortium Meeting 2007

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Topics

GO Team Reports

Listed with potential people to provide the summaries

  1. Reference Genomes - Rex&Karen
  2. Ontology Content - David&Midori
    • IS_A complete
    • regulates
    • Cell Ontology links
  3. Ontology & Software - Chris&Ben/Mike
    • Includes OBO-Edit working group report
  4. Annotation outreach - Jen&Michelle/Simon
  5. User Advocacy - Eurie&Jane
    • Includes AmiGO working group report
  6. Operations - Suzi

Status updates

  1. Publications

Issues to be addressed

Please add items below that you think need to be presented. We are not -yet- putting these in any particular order or time, we're just collecting the topics we need to address while we are together.

  1. The issue of using the GO_REF vs extension of the evidence codes to amplify upon the method that is used.
  2. gp2protein file:
    • The lagtime between when the protein sequences of a newly sequenced and annotated organism are published, and when they make it into UniProt. For example, even now only ~10% of 27,855 arabidopsis protein sequences are contained in Swiss-Prot. For the final release (version 5) of arabidopsis, 306 proteins (~1%) are available in Swiss-Prot and 374 in TrEMBL. Older arabidopsis sequences are found in TrEMBL, but fully 1/3 of the sequences found in the first release have changed over the life of the project.
    • GOST needs to use the precise sequences, as supplied by the submitting group
  3. Handling multiple identifiers for gene products and sequences
  4. Evaluation of project tracking methods
  5. More?? Claim some? Explain some?

New proposals

  1. Protein Family based annotation tool - Suzi
  2. Term history tracking capability - John/Chris/and OBO-Edit group

Venue

 Click here to register for this meeting. Please do this by October 31st
 Jesus College
 Jesus Lane, Cambridge, CB5 8BL, UK
 Cambridge, UK