GO stats-glossary: Difference between revisions

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=aspect==
=aspect=
==A==: all (biological_process + molecular_function + cellular_component)
* '''A:''' all aspects combined: biological_process + molecular_function + cellular_component
==P==: biological_process
* '''B:''' Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding.
==F==: molecular_function
* '''P:''' biological_process
==C==: cellular_component
* '''F:''' molecular_function
* '''C:''' cellular_component


=bioentitiy type=
=bioentity type=
In the October 2019 release, the bioentity types used are:  
In the October 2019 release, the bioentity types used are:  
*protein
*protein
Line 32: Line 33:
*tmRNA
*tmRNA


=RNA_cluster=
=bioentity type cluster=
Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA
The bioentity type clusters are:
*protein
*protein_complex
*gene_product
*gene
*transcript
*primary_transcript
*RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA




=evidence_cluster=
=evidence_cluster=
==PHYLO==: IBA, IKR, IRD and IMR (retired)
Evidence grouped as follows:
==IEA==: IEA
* '''PHYLO:''' IBA, IKR, IRD and IMR (retired)
==OTHER==: IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS

* '''IEA:'''IEA
==EXP==: EXP, IDA, IEP, IGC, IGI, IMP, IPI

* '''OTHER:''' IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS

==ND==: ND

* '''EXP:''' EXP, IDA, IEP, IGC, IGI, IMP, IPI

==HTP==: HDA, HEP, HGI, HMP, HTP
* '''ND:''' ND

* '''HTP:''' HDA, HEP, HGI, HMP, HTP


=filtered taxa=
=filtered taxa=
Taxa with > 1,000 annotations (including IEAs)
Taxa with > 1,000 annotations (including IEAs)
=model_organism =
=model_organism =
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:
NCBITaxon:9606, Homo sapiens
*NCBITaxon:9606, Homo sapiens
NCBITaxon:10116|Rattus norvegicus
*NCBITaxon:10116|Rattus norvegicus
NCBITaxon:10090|Mus musculus
*NCBITaxon:10090|Mus musculus
NCBITaxon:3702|Arabidopsis thaliana
*NCBITaxon:3702|Arabidopsis thaliana
NCBITaxon:7955|Danio rerio
*NCBITaxon:7955|Danio rerio
NCBITaxon:6239|Caenorhabditis elegans
*NCBITaxon:6239|Caenorhabditis elegans
NCBITaxon:559292|Saccharomyces cerevisiae S288C
*NCBITaxon:559292|Saccharomyces cerevisiae S288C
NCBITaxon:7227|Drosophila melanogaster
*NCBITaxon:7227|Drosophila melanogaster
NCBITaxon:44689|Dictyostelium discoideum
*NCBITaxon:44689|Dictyostelium discoideum
NCBITaxon:4896|Schizosaccharomyces pombe
*NCBITaxon:4896|Schizosaccharomyces pombe
NCBITaxon:83333|Escherichia coli K-12
*NCBITaxon:83333|Escherichia coli K-12


= Review Status =
= Review Status =


Last reviewed: October 18, 2019
Last reviewed: October 24, 2019




[[Category:Release Pipeline]]
[[Category:Release Pipeline]]

Latest revision as of 16:25, 24 October 2019

aspect

  • A: all aspects combined: biological_process + molecular_function + cellular_component
  • B: Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding.
  • P: biological_process
  • F: molecular_function
  • C: cellular_component

bioentity type

In the October 2019 release, the bioentity types used are:

  • protein
  • protein_complex
  • gene_product
  • gene
  • transcript
  • primary_transcript
  • tRNA
  • miRNA
  • antisense_lncRNA
  • snoRNA
  • rRNA
  • RNA
  • ncRNA
  • snRNA
  • scRNA
  • lnc_RNA
  • lincRNA
  • pseudogene
  • RNase_MRP_RNA
  • antisense_RNA
  • RNase_P_RNA
  • telomerase_RNA
  • tmRNA

bioentity type cluster

The bioentity type clusters are:

  • protein
  • protein_complex
  • gene_product
  • gene
  • transcript
  • primary_transcript
  • RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA


evidence_cluster

Evidence grouped as follows:

  • PHYLO: IBA, IKR, IRD and IMR (retired)
  • IEA:IEA
  • OTHER: IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS

  • EXP: EXP, IDA, IEP, IGC, IGI, IMP, IPI

  • ND: ND

  • HTP: HDA, HEP, HGI, HMP, HTP

filtered taxa

Taxa with > 1,000 annotations (including IEAs)

model_organism

Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:

  • NCBITaxon:9606, Homo sapiens
  • NCBITaxon:10116|Rattus norvegicus
  • NCBITaxon:10090|Mus musculus
  • NCBITaxon:3702|Arabidopsis thaliana
  • NCBITaxon:7955|Danio rerio
  • NCBITaxon:6239|Caenorhabditis elegans
  • NCBITaxon:559292|Saccharomyces cerevisiae S288C
  • NCBITaxon:7227|Drosophila melanogaster
  • NCBITaxon:44689|Dictyostelium discoideum
  • NCBITaxon:4896|Schizosaccharomyces pombe
  • NCBITaxon:83333|Escherichia coli K-12

Review Status

Last reviewed: October 24, 2019