GO stats-glossary: Difference between revisions
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(Created page with " =aspect== ==A==: all (biological_process + molecular_function + cellular_component) ==P==: biological_process ==F==: molecular_function ==C==: cellular_component =bioentit...") |
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=aspect | =aspect= | ||
* '''A:''' all aspects combined: biological_process + molecular_function + cellular_component | |||
* '''B:''' Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding. | |||
* '''P:''' biological_process | |||
* '''F:''' molecular_function | |||
* '''C:''' cellular_component | |||
= | =bioentity type= | ||
In the October 2019 release, the bioentity types used are: | In the October 2019 release, the bioentity types used are: | ||
*protein | *protein | ||
Line 32: | Line 33: | ||
*tmRNA | *tmRNA | ||
= | =bioentity type cluster= | ||
Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA | The bioentity type clusters are: | ||
*protein | |||
*protein_complex | |||
*gene_product | |||
*gene | |||
*transcript | |||
*primary_transcript | |||
*RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA | |||
=evidence_cluster= | =evidence_cluster= | ||
Evidence grouped as follows: | |||
* '''PHYLO:''' IBA, IKR, IRD and IMR (retired) | |||
* '''IEA:'''IEA | |||
* '''OTHER:''' IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS
| |||
* '''EXP:''' EXP, IDA, IEP, IGC, IGI, IMP, IPI
| |||
* '''ND:''' ND
| |||
* '''HTP:''' HDA, HEP, HGI, HMP, HTP | |||
=filtered taxa= | =filtered taxa= | ||
Taxa with > 1,000 annotations (including IEAs) | Taxa with > 1,000 annotations (including IEAs) | ||
=model_organism = | =model_organism = | ||
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms: | Data sets labeled 'by_model_organims' contain data for human and 10 model organisms: | ||
NCBITaxon:9606, Homo sapiens | *NCBITaxon:9606, Homo sapiens | ||
NCBITaxon:10116|Rattus norvegicus | *NCBITaxon:10116|Rattus norvegicus | ||
NCBITaxon:10090|Mus musculus | *NCBITaxon:10090|Mus musculus | ||
NCBITaxon:3702|Arabidopsis thaliana | *NCBITaxon:3702|Arabidopsis thaliana | ||
NCBITaxon:7955|Danio rerio | *NCBITaxon:7955|Danio rerio | ||
NCBITaxon:6239|Caenorhabditis elegans | *NCBITaxon:6239|Caenorhabditis elegans | ||
NCBITaxon:559292|Saccharomyces cerevisiae S288C | *NCBITaxon:559292|Saccharomyces cerevisiae S288C | ||
NCBITaxon:7227|Drosophila melanogaster | *NCBITaxon:7227|Drosophila melanogaster | ||
NCBITaxon:44689|Dictyostelium discoideum | *NCBITaxon:44689|Dictyostelium discoideum | ||
NCBITaxon:4896|Schizosaccharomyces pombe | *NCBITaxon:4896|Schizosaccharomyces pombe | ||
NCBITaxon:83333|Escherichia coli K-12 | *NCBITaxon:83333|Escherichia coli K-12 | ||
= Review Status = | = Review Status = | ||
Last reviewed: October | Last reviewed: October 24, 2019 | ||
[[Category:Release Pipeline]] | [[Category:Release Pipeline]] |
Latest revision as of 16:25, 24 October 2019
aspect
- A: all aspects combined: biological_process + molecular_function + cellular_component
- B: Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding.
- P: biological_process
- F: molecular_function
- C: cellular_component
bioentity type
In the October 2019 release, the bioentity types used are:
- protein
- protein_complex
- gene_product
- gene
- transcript
- primary_transcript
- tRNA
- miRNA
- antisense_lncRNA
- snoRNA
- rRNA
- RNA
- ncRNA
- snRNA
- scRNA
- lnc_RNA
- lincRNA
- pseudogene
- RNase_MRP_RNA
- antisense_RNA
- RNase_P_RNA
- telomerase_RNA
- tmRNA
bioentity type cluster
The bioentity type clusters are:
- protein
- protein_complex
- gene_product
- gene
- transcript
- primary_transcript
- RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA
evidence_cluster
Evidence grouped as follows:
- PHYLO: IBA, IKR, IRD and IMR (retired)
- IEA:IEA
- OTHER: IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS
- EXP: EXP, IDA, IEP, IGC, IGI, IMP, IPI
- ND: ND
- HTP: HDA, HEP, HGI, HMP, HTP
filtered taxa
Taxa with > 1,000 annotations (including IEAs)
model_organism
Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:
- NCBITaxon:9606, Homo sapiens
- NCBITaxon:10116|Rattus norvegicus
- NCBITaxon:10090|Mus musculus
- NCBITaxon:3702|Arabidopsis thaliana
- NCBITaxon:7955|Danio rerio
- NCBITaxon:6239|Caenorhabditis elegans
- NCBITaxon:559292|Saccharomyces cerevisiae S288C
- NCBITaxon:7227|Drosophila melanogaster
- NCBITaxon:44689|Dictyostelium discoideum
- NCBITaxon:4896|Schizosaccharomyces pombe
- NCBITaxon:83333|Escherichia coli K-12
Review Status
Last reviewed: October 24, 2019