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aspect

A: all aspects combined: biological_process + molecular_function + cellular_component
B: Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding.
P: biological_process
F: molecular_function
C: cellular_component

bioentity type

In the October 2019 release, the bioentity types used are:

protein
protein_complex
gene_product
gene
transcript
primary_transcript
tRNA
miRNA
antisense_lncRNA
snoRNA
rRNA
RNA
ncRNA
snRNA
scRNA
lnc_RNA
lincRNA
pseudogene
RNase_MRP_RNA
antisense_RNA
RNase_P_RNA
telomerase_RNA
tmRNA

bioentity type cluster

The bioentity type clusters are:

protein
protein_complex
gene_product
gene
transcript
primary_transcript
RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA

evidence_cluster

Evidence grouped as follows:

PHYLO: IBA, IKR, IRD and IMR (retired)
IEA:IEA
OTHER: IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS 
EXP: EXP, IDA, IEP, IGC, IGI, IMP, IPI 
ND: ND 
HTP: HDA, HEP, HGI, HMP, HTP

filtered taxa

Taxa with > 1,000 annotations (including IEAs)

model_organism

Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:

NCBITaxon:9606, Homo sapiens
NCBITaxon:10116|Rattus norvegicus
NCBITaxon:10090|Mus musculus
NCBITaxon:3702|Arabidopsis thaliana
NCBITaxon:7955|Danio rerio
NCBITaxon:6239|Caenorhabditis elegans
NCBITaxon:559292|Saccharomyces cerevisiae S288C
NCBITaxon:7227|Drosophila melanogaster
NCBITaxon:44689|Dictyostelium discoideum
NCBITaxon:4896|Schizosaccharomyces pombe
NCBITaxon:83333|Escherichia coli K-12

Review Status

Last reviewed: October 24, 2019

GO stats-glossary

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