Galaxy: Difference between revisions
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* [https://bitbucket.org/cmungall/galaxy-obo/overview galaxy-obo] | * [https://bitbucket.org/cmungall/galaxy-obo/overview galaxy-obo] | ||
* [https://bitbucket.org/galaxy/galaxy-dist galaxy-dist] | * [https://bitbucket.org/galaxy/galaxy-dist galaxy-dist] | ||
=== Installing locally === | |||
1. install mercurial | |||
2. Type: | |||
hg clone https://bitbucket.org/cmungall/galaxy-obo | |||
3. Follow the instructions in [https://bitbucket.org/cmungall/galaxy-obo/raw/42c7aceb232a/README-galaxy-obo.txt README-galaxy-obo.txt] | |||
more README-galaxy-obo.txt | |||
== Term Enrichment Format == | == Term Enrichment Format == |
Revision as of 16:47, 3 April 2012
Current URL: http://galaxy.berkeleybop.org
The GO Galaxy instance is a place to do all your analyses in one place
- term enrichment
- format conversion (e.g. obo to owl)
- annotation file munging (e.g. mapping to slim)
Source
We maintain the GO/OBO galaxy tool configurations and helper scripts as a fork off of the main galaxy-dist repo in bitbucket.
Installing locally
1. install mercurial 2. Type: hg clone https://bitbucket.org/cmungall/galaxy-obo 3. Follow the instructions in README-galaxy-obo.txt more README-galaxy-obo.txt
Term Enrichment Format
See Is there a standard format for TE results?
Publications
Erick Antezana, Aravind Venkatesan, C J Mungall, Vladimir Mironov, Martin Kuiper (2010) ONTO-ToolKit: enabling bio-ontology engineering via Galaxy, BMC Bioinformatics 11 (Suppl 12)