Galaxy: Difference between revisions

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See [http://biostar.stackexchange.com/questions/11269/is-there-a-standard-format-for-go-term-enrichment-results Is there a standard format for TE results?]
See [http://biostar.stackexchange.com/questions/11269/is-there-a-standard-format-for-go-term-enrichment-results Is there a standard format for TE results?]
* [http://code.google.com/p/terf/ TERF] project on googlecode


== Publications ==
== Publications ==


Erick Antezana, Aravind Venkatesan, C J Mungall, Vladimir Mironov, Martin Kuiper (2010) [http://www.biomedcentral.com/1471-2105/11/S12/S8 ONTO-ToolKit: enabling bio-ontology engineering via Galaxy], ''BMC Bioinformatics 11 (Suppl 12)''
Erick Antezana, Aravind Venkatesan, C J Mungall, Vladimir Mironov, Martin Kuiper (2010) [http://www.biomedcentral.com/1471-2105/11/S12/S8 ONTO-ToolKit: enabling bio-ontology engineering via Galaxy], ''BMC Bioinformatics 11 (Suppl 12)''

Revision as of 16:47, 3 April 2012

Current URL: http://galaxy.berkeleybop.org

The GO Galaxy instance is a place to do all your analyses in one place

  • term enrichment
  • format conversion (e.g. obo to owl)
  • annotation file munging (e.g. mapping to slim)

Source

We maintain the GO/OBO galaxy tool configurations and helper scripts as a fork off of the main galaxy-dist repo in bitbucket.

Installing locally

1. install mercurial
2. Type:
  hg clone https://bitbucket.org/cmungall/galaxy-obo
3. Follow the instructions in README-galaxy-obo.txt
  more README-galaxy-obo.txt

Term Enrichment Format

See Is there a standard format for TE results?

  • TERF project on googlecode

Publications

Erick Antezana, Aravind Venkatesan, C J Mungall, Vladimir Mironov, Martin Kuiper (2010) ONTO-ToolKit: enabling bio-ontology engineering via Galaxy, BMC Bioinformatics 11 (Suppl 12)