Galaxy: Difference between revisions
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See [http://biostar.stackexchange.com/questions/11269/is-there-a-standard-format-for-go-term-enrichment-results Is there a standard format for TE results?] | See [http://biostar.stackexchange.com/questions/11269/is-there-a-standard-format-for-go-term-enrichment-results Is there a standard format for TE results?] | ||
* [http://code.google.com/p/terf/ TERF] project on googlecode | |||
== Publications == | == Publications == | ||
Erick Antezana, Aravind Venkatesan, C J Mungall, Vladimir Mironov, Martin Kuiper (2010) [http://www.biomedcentral.com/1471-2105/11/S12/S8 ONTO-ToolKit: enabling bio-ontology engineering via Galaxy], ''BMC Bioinformatics 11 (Suppl 12)'' | Erick Antezana, Aravind Venkatesan, C J Mungall, Vladimir Mironov, Martin Kuiper (2010) [http://www.biomedcentral.com/1471-2105/11/S12/S8 ONTO-ToolKit: enabling bio-ontology engineering via Galaxy], ''BMC Bioinformatics 11 (Suppl 12)'' |
Revision as of 16:47, 3 April 2012
Current URL: http://galaxy.berkeleybop.org
The GO Galaxy instance is a place to do all your analyses in one place
- term enrichment
- format conversion (e.g. obo to owl)
- annotation file munging (e.g. mapping to slim)
Source
We maintain the GO/OBO galaxy tool configurations and helper scripts as a fork off of the main galaxy-dist repo in bitbucket.
Installing locally
1. install mercurial 2. Type: hg clone https://bitbucket.org/cmungall/galaxy-obo 3. Follow the instructions in README-galaxy-obo.txt more README-galaxy-obo.txt
Term Enrichment Format
See Is there a standard format for TE results?
- TERF project on googlecode
Publications
Erick Antezana, Aravind Venkatesan, C J Mungall, Vladimir Mironov, Martin Kuiper (2010) ONTO-ToolKit: enabling bio-ontology engineering via Galaxy, BMC Bioinformatics 11 (Suppl 12)