Current URL: http://galaxy.berkeleybop.org
The GO website lists >50 tools for doing GO-based analyses but these are not well integrated. AmiGO/GOOSE offers some functionality such as slimming, enrichment, data extraction but these are difficult to chain together. A simple integrated environment in which tools could be linked in workflows would be beneficial to the community.
The GO Galaxy instance is an environment to do all your analyses in one place
- term enrichment
- format conversion (e.g. obo to owl)
- annotation file munging (e.g. mapping to slim)
We maintain the GO/OBO galaxy tool configurations and helper scripts as a fork off of the main galaxy-dist repo in bitbucket.
1. install mercurial 2. Type: hg clone https://bitbucket.org/cmungall/galaxy-obo 3. Follow the instructions in README-galaxy-obo.txt more README-galaxy-obo.txt
Term Enrichment Format
- TERF project on googlecode