Gp2protein report

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Revision as of 17:25, 31 January 2008 by Hitz (talk | contribs) (New page: - GOC gp2protein report cvs: org/util/cron/go/gp2protein_report.pl This needs to be moved to the regular go cvs, out of SGD. steps: login to goad as mysql [mysql@goad load]$ ...)

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- GOC gp2protein report

 cvs:
 org/util/cron/go/gp2protein_report.pl

This needs to be moved to the regular go cvs, out of SGD.

 steps:
 login to goad as mysql
 [mysql@goad load]$ pwd
 /share/godev/golite/load
 mkdir gpReport   (where report files will be generated)
 scp the script gp2protein_report.pl  to gpReport/  (or in any official place via cvs co)
 #test run, no email send out and email content to stdout
 mysql@goad gpReport]$ perl gp2protein_report.pl -log ../gp2protein_fail.log -user goadmin -pssd hoot1Nov -sock /db0/mysql/admin/golite/mysql.sock -reportdir . > temp.report
 # real run with -dosend, will send report emails to mods
 mysql@goad gpReport]$ perl gp2protein_report.pl -log ../gp2protein_fail.log -user goadmin -pssd hoot1Nov -sock /db0/mysql/admin/golite/mysql.sock -reportdir . -dosend
 take all report files from gpReport directory and deposit into goc cvs which is accessible from web.
 http://www.geneontology.org/internal-reports/gp2protein/

We need to put this in a cron job as well