Guidelines for database cross references: Difference between revisions
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(Created page with " See Ontology_Editors_Daily_Workflow for creating branches and basic Protégé instructions. DRAFT We have two types of cross-references in the ontology: (1) De...") |
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General database cross-references are links to external resources. | General database cross-references are links to external resources. | ||
* Rhea | * Rhea | ||
* Reactome | |||
* EC | * EC | ||
* MetaCyc | * MetaCyc | ||
* KEGG | * KEGG | ||
See [[Ontology_Editors_Daily_Workflow]] for commit, push and merge instructions. | See [[Ontology_Editors_Daily_Workflow]] for commit, push and merge instructions. | ||
== Review Status == | == Review Status == | ||
Revision as of 12:53, 26 February 2020
See Ontology_Editors_Daily_Workflow for creating branches and basic Protégé instructions.
DRAFT
We have two types of cross-references in the ontology: (1) Definition database cross-references and (2) General database cross-references.
Definition database cross-references
Definition database cross-references are citable references that have helped generate the term and term's definition. Includes
- PMIDs (ideally all terms should have a PMID, but we have many terms not having them yet)
- Rhea for enzymes
Can also include (if nothing else is available)
- ISBN
- Wikipedia
- EC
- MetaCyc
- KEGG
General database cross-references
General database cross-references are links to external resources.
- Rhea
- Reactome
- EC
- MetaCyc
- KEGG
See Ontology_Editors_Daily_Workflow for commit, push and merge instructions.
Review Status
Last reviewed: February 26, 2020