Guidelines for 'database cross references' and 'definition database cross references'

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 See Ontology_Editors_Daily_Workflow for creating branches and basic Protégé instructions.


  DRAFT 


We have two types of cross-references in the ontology: (1) Definition database cross-references and (2) General database cross-references.

Definition database cross-references

Definition database cross-references are citable references that have helped generate the term and term's definition. Includes

  • PMIDs (ideally all terms should have a PMID, but we have many terms not having them yet)
  • Rhea for enzymes

Can also include (if nothing else is available)

  • ISBN
  • Wikipedia
  • EC
  • MetaCyc
  • KEGG

General database cross-references

General database cross-references are links to external resources.

  • Rhea
  • EC
  • MetaCyc
  • KEGG


 See Ontology_Editors_Daily_Workflow for commit, push and merge instructions.


Review Status

Last reviewed: February 26, 2020

Back to: Editing the Ontology