Hinxton OBO-Edit/Protege 4 workshop Jan 2012: Difference between revisions

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*[http://www.slideshare.net/dosumis/from-obo-to-owl-and-back-building-scalable-ontologies David OS's slides]
*[http://www.slideshare.net/dosumis/from-obo-to-owl-and-back-building-scalable-ontologies David OS's slides]


===Software Required===
===Software and downloads Required===


You should have the following installed on your laptop ''prior'' to the meeting:
You should have the following installed on your laptop ''prior'' to the meeting:
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* OBO-Edit 2.1
* OBO-Edit 2.1
* The [http://code.google.com/p/owltools/wiki/OBOReleaseManagerGUIDocumentation Oort GUI]
* The [http://code.google.com/p/owltools/wiki/OBOReleaseManagerGUIDocumentation Oort GUI]
==== Downloads ====
Tutorial files will be added here


===Meeting Logistics===
===Meeting Logistics===

Revision as of 12:50, 16 November 2011

EBI, January 30-31 2012

We're looking at running a fairly small, informal training workshop for using Protege 4 for ontology development, especially using it wrt OWL/OBO interconversion and editing in Protege and OBO-Edit simultaneously. It'll be very much a hands-on thing, largely for the benefit of the Gene Ontology developers, but we'd be happy for others to sit in if they were interested.

Tentative Schedule

Day 1

  • Intro to OWL [Chris]
  • Demo of OBO-Edit/P4 dual-editing [David OS]
  • P4 tutorial [David OS? Simon and James?]

Day 2

  • P4 tutorial cont.
  • Practical ontology development using P4/OE
  • Discussion of potential specifications for P4

Preliminary list of participants:

Chris Mungall (Berkeley)

Tanya Berardini (TAIR)

Judith Blake (MGI)

Rebecca Foulger (GO, EBI)

Midori Harris (PomBase, University of Cambridge)

David Hill (MGI)

Jane Lomax (GO, EBI)

David Osumi-Sutherland (FlyBase, University of Cambridge)

Paola Roncaglia (GO, EBI)

James Malone (EBI)

Simon Jupp (EBI)

John Ison (EBI)

Marcus Ennis (CHEBI, EBI)

Michael Schroeder (Technische Universität Dresden)

Thomas Wächter (Technische Universität Dresden)

Useful links:

Software and downloads Required

You should have the following installed on your laptop prior to the meeting:

  • Protege4 4.1 recommended. You could also install 4.2alpha side by side
    • Plugins (some of these may be distributed with P4 already):
      • ELK
  • OBO-Edit 2.1
  • The Oort GUI

Downloads

Tutorial files will be added here

Meeting Logistics