Hinxton OBO-Edit/Protege 4 workshop Jan 2012: Difference between revisions

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David Hill (MGI)
David Hill (MGI)
Harold Drabkin (MGI)


Jane Lomax (GO, EBI)
Jane Lomax (GO, EBI)


David Osumi-Sutherland (FlyBase, University of Cambridge)
David Osumi-Sutherland (FlyBase, University of Cambridge)
Karen Christie (SGD) ?


Paola Roncaglia (GO, EBI)
Paola Roncaglia (GO, EBI)

Revision as of 05:50, 22 November 2011

EBI, January 30-31 2012

We're looking at running a fairly small, informal training workshop for using Protege 4 for ontology development, especially using it wrt OWL/OBO interconversion and editing in Protege and OBO-Edit simultaneously. It'll be very much a hands-on thing, largely for the benefit of the Gene Ontology developers, but we'd be happy for others to sit in if they were interested.

Tentative Schedule

Day 1

  • Intro to OWL [Chris]
  • Basic obo to owl concepts
  • Demo of OBO-Edit/P4 dual-editing [David OS]
  • P4 tutorial [David OS? Simon and James?]

Day 2

  • P4 tutorial cont.
  • Practical ontology development using P4/OE
  • Discussion of potential specifications for P4

Preliminary list of participants:

Chris Mungall (Berkeley)

Tanya Berardini (TAIR)

Judith Blake (MGI)

Rebecca Foulger (GO, EBI)

Midori Harris (PomBase, University of Cambridge)

David Hill (MGI)

Harold Drabkin (MGI)

Jane Lomax (GO, EBI)

David Osumi-Sutherland (FlyBase, University of Cambridge)

Karen Christie (SGD) ?

Paola Roncaglia (GO, EBI)

James Malone (EBI)

Simon Jupp (EBI)

John Ison (EBI)

Marcus Ennis (CHEBI, EBI)

Michael Schroeder (Technische Universität Dresden)

Thomas Wächter (Technische Universität Dresden)

Useful links:

Software and downloads Required

You should have the following installed on your laptop prior to the meeting:

  • Protege4 4.1 recommended. You could also install 4.2alpha side by side
    • Plugins (some of these may be distributed with P4 already):
      • ELK
  • OBO-Edit 2.1
  • The Oort GUI

Downloads

Tutorial files will be added here

Meeting Logistics