Difference between revisions of "Implementation"

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== 14th November, 2007 ==
 
== 14th November, 2007 ==
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Make a branch file in go/scratch directory named response_to_drug.obo
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format-version: 1.2
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date: 13:11:2007 17:31
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saved-by: erika
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auto-generated-by: OBO-Edit 1.101
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subsetdef: goslim_candida "Candida GO slim"
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subsetdef: goslim_generic "Generic GO slim"
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subsetdef: goslim_goa "GOA and proteome slim"
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subsetdef: goslim_pir "PIR GO slim"
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subsetdef: goslim_plant "Plant GO slim"
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subsetdef: goslim_yeast "Yeast GO slim"
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subsetdef: gosubset_prok "Prokaryotic GO subset"
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default-namespace: gene_ontology
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remark: cvs version: $Revision: 5.544 $
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I am working on "drug transport" term.<br>
 
I am working on "drug transport" term.<br>
 
*Add a new term: GO:0014076 "chemical substance transport"<br>
 
*Add a new term: GO:0014076 "chemical substance transport"<br>

Revision as of 05:54, 14 November 2007

13rd November, 2007

I have solved problems about almost all child terms of "response to drug" term. The changes are already in the lived file.

14th November, 2007

Make a branch file in go/scratch directory named response_to_drug.obo

format-version: 1.2
date: 13:11:2007 17:31
saved-by: erika
auto-generated-by: OBO-Edit 1.101
subsetdef: goslim_candida "Candida GO slim"
subsetdef: goslim_generic "Generic GO slim"
subsetdef: goslim_goa "GOA and proteome slim"
subsetdef: goslim_pir "PIR GO slim"
subsetdef: goslim_plant "Plant GO slim"
subsetdef: goslim_yeast "Yeast GO slim"
subsetdef: gosubset_prok "Prokaryotic GO subset"
default-namespace: gene_ontology
remark: cvs version: $Revision: 5.544 $

I am working on "drug transport" term.

  • Add a new term: GO:0014076 "chemical substance transport"
  • Move "chemical substance transport" as is_a child of "transport" general term
  • Add a new term: GO:0014077 "organic substance transport"
  • Move "organicl substance transport" as is_a child of "transport" general term
  • Move "antibiotic transport" as part_of "response to antibiotic"
  • Copy "antibiotic transport" as is_a of "chemical substance transport"
  • Move "bicyclomycin transport" as is_a "antibiotic transport"
  • Copy response to cycloheximide as is_a child of response to antibiotic
  • Move "cycloheximide transport" as is_a "antibiotic transport"
  • Move tetracyclin transport is_a GO:0014077 "organic substance transport"
  • Move organomercurial transport is_a GO:0014077 "organic substance transport"
  • Move nalidixic acid transport is_a child of antibiotic transport
  • Move alkane transport as is_a child of organic substance transport
  • Move carbonyl cyanide m-chlorophenylhydrazone transport as is_a child of organic substance transport
  • Move daunorubicin transport as is_a "antibiotic transport"

To be asked GO curator

  • I need to create a branch file in scratch directory named response_to_drug.obo
  • Proposal to obsolete drug export GO:0046618 has just 6 gene associations
  • Proposal to obsolete multidrug transport GO:0006855 .It has almost the same defintion of drug transport GO:00415893 but it has 318 gene associations.

To be asked ChEBI curator

  • amiloride
  • acriflavine
  • azole
  • benomyl
  • cycloheximide