January/February 2010 lung targets: Difference between revisions
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[[Category:Lung Development Genes]] | |||
==January/February 2010 targets== | ==January/February 2010 targets== | ||
Annotation Progress | Annotation Progress - <font color ="red"> High priority targets are in red</font> | ||
{|border="1" cell spacing="0" cellpadding="5" align="center" | {|border="1" cell spacing="0" cellpadding="5" align="center" | ||
!link to family members | !link to family members | ||
Line 19: | Line 20: | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/ACER2 | |http://wiki.geneontology.org/index.php/ACER2 | ||
|ACER2 | |<font color ="red">ACER2</font> | ||
| | | - | ||
| | | done (2) | ||
| | | - | ||
| 2 genes - no EXP | | 2 genes - no EXP | ||
| | | done (2) | ||
| | | done | ||
| | |no Zfish gene | ||
| | |done (1) | ||
| | |no EXP | ||
| | |done | ||
| | |done | ||
|done (2) | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/ADCY7 | |http://wiki.geneontology.org/index.php/ADCY7 | ||
|ADCY7 | |<font color ="red">ADCY7</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
| no Dicty | | no Dicty | ||
| - | |||
| no worm | |||
| done (1) | |||
| | | | ||
| | |no EXP | ||
| | |done | ||
| | |done | ||
|done (2) | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/ALOX5AP_RefG | |http://wiki.geneontology.org/index.php/ALOX5AP_RefG | ||
|ALOX5AP | |<font color ="red">ALOX5AP</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
| 1 gene - no EXP | | 1 gene - no EXP | ||
| | | - | ||
| | | no worm | ||
| | | done (2) | ||
| | |no fly | ||
| | |no EXP | ||
| | |done | ||
| | |done | ||
| | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/ANGPT1 | |http://wiki.geneontology.org/index.php/ANGPT1 | ||
|ANGPT1 | |<font color ="red">ANGPT1</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
| no Dicty | | no Dicty | ||
| - | |||
| no worm | |||
| done (1) | |||
|no fly | |||
| | | | ||
| | |done | ||
| | |done | ||
| | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/ANXA3 | |http://wiki.geneontology.org/index.php/ANXA3 | ||
|ANXA3 | |<font color ="red">ANXA3</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
| 1 gene - done | | 1 gene - done | ||
| done (2) | |||
| done (3/4) | |||
| done (4) | |||
| | | | ||
| | | | ||
| | |done | ||
| | |done | ||
| | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/AQP1 | |http://wiki.geneontology.org/index.php/AQP1 | ||
|AQP1 | |<font color ="red">AQP1 | ||
| | | aqpZ (in progress) | ||
| | | - | ||
| | | - | ||
| | | 5 genes no EXP (aqpA, wacA, done) | ||
| | | 8 (in progress) | ||
| | | | ||
| done (1) | |||
| | | | ||
| | | | ||
|done | |||
|done | |||
|done (1) | |||
|- | |- | ||
|http://wiki.geneontology.org/index.php/CDKN2 | |http://wiki.geneontology.org/index.php/CDKN2 | ||
|CDKN2A, CDKN2B | |<font color ="red">CDKN2A, CDKN2B</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
| no Dicty | | no Dicty | ||
| - | |||
| no worm | |||
| done (1) | |||
|no fly | |||
| | | | ||
| | |1 of 3 done, Cdkn2a, 2b in progress | ||
| | |done | ||
|done (3) | |done (3) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/COL4A4 | |http://wiki.geneontology.org/index.php/COL4A4 | ||
|COL4A4 | |<font color ="red">COL4A4</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
| no Dicty | | no Dicty | ||
| | | - | ||
| | | no worm | ||
| | | no zfish gene | ||
| | |no fly | ||
| | |no EXP | ||
| | |done | ||
| | |done | ||
| | |done (1) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/DUSP6 | |http://wiki.geneontology.org/index.php/DUSP6 | ||
|DUSP6 | |<font color ="red">DUSP6</font> | ||
| | | ynbD (in progress) | ||
| | | done (4) | ||
| | |in progress (2) | ||
| 2/7 have EXP, mpl1 done, dupA to finish | | 2/7 have EXP, mpl1 done, dupA to finish | ||
| done (5) | |||
| done | |||
| done (2) | |||
| | | | ||
| | | | ||
| | |1 of 2 done, Dusp6 in progress | ||
| | |done | ||
| | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/ENG_RefG | |http://wiki.geneontology.org/index.php/ENG_RefG | ||
|ENG | |<font color ="red">ENG</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
| no Dicty | | no Dicty | ||
| - | |||
| no worm | |||
| Only Ensembl gene, matches nothing in zfin, done | |||
|no fly | |||
| | | | ||
| | |in progress | ||
| | |done | ||
|done (2) | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/GSTT1 | |http://wiki.geneontology.org/index.php/GSTT1 | ||
|GSTT1 | |GSTT1 | ||
| | | - | ||
| | | - | ||
| | | - | ||
| 2 genes - no EXP | | 2 genes - no EXP | ||
| | | | ||
| no worm | |||
| done (2) | |||
| | | | ||
| | | | ||
| | |done | ||
| | |done | ||
| | |done (1) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/HMGB2 | |http://wiki.geneontology.org/index.php/HMGB2 | ||
|HMGB2 | |HMGB2 | ||
| | | - | ||
| | | done (6) | ||
| | | - (3 genes here but ortholog predictions inc, not appropriate for annotation tf) | ||
| 1 gene, no EXP | | 1 gene, no EXP | ||
| - | |||
| | | | ||
| done (6) | |||
| | | | ||
| | | | ||
| | |12 of 14 done, Hmgb1 and Hmgb2 in progress | ||
| | |done | ||
| | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/PLEKHA2 | |http://wiki.geneontology.org/index.php/PLEKHA2 | ||
|PLEKHA2 | |<font color ="red">PLEKHA2</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
|1 gene, no EXP | |1 gene, no EXP | ||
| | | - | ||
| | | no worm | ||
| | | done (1) | ||
| | |no fly | ||
| | |no EXP | ||
| | |done | ||
| | |done | ||
|done (2) | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/S100A13 | |http://wiki.geneontology.org/index.php/S100A13 | ||
|S100A13 | |<font color ="red">S100A13</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
| no Dicty | | no Dicty | ||
| | | - | ||
| | | no worm | ||
| | | done (1) | ||
| | |no fly | ||
| | |no EXP | ||
| | |done | ||
| | |done | ||
|done (2) | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/SERPINB9 | |http://wiki.geneontology.org/index.php/SERPINB9 | ||
|SERPINB9 | |<font color ="red">SERPINB9</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
| no Dicty | | no Dicty | ||
| | | - | ||
| | | no worm | ||
| | | no zfish gene | ||
| | |no fly | ||
| | |no Gallus | ||
| | |done | ||
| | |done | ||
| | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/SERPINE1 | |http://wiki.geneontology.org/index.php/SERPINE1 | ||
|SERPINE1 | |SERPINE1 | ||
| | | - | ||
| | | - | ||
| | | - | ||
| no Dicty | | no Dicty | ||
| - | |||
| worm | |||
| done (1) | |||
|no fly | |||
| | | | ||
| | |1 of 2 done, Serpine1 in progress | ||
| | |done | ||
| | |done (2) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/TAP2_RefG | |http://wiki.geneontology.org/index.php/TAP2_RefG | ||
|TAP2 | |<font color ="red">TAP2</font> | ||
| | | 2 (mdlA & msbA), to do | ||
| | | done (2) | ||
| | | done (1) | ||
| 2 genes (tagA, abcB1), to do | | 2 genes (tagA, abcB1), to do | ||
| done (2) | |||
| | | | ||
| done (3) | |||
|done (1) no EXP | |||
| | | | ||
| | |2 of 3 done, Tap2 in progress | ||
| | |done | ||
| | |done (3) | ||
|- | |- | ||
|http://wiki.geneontology.org/index.php/THBS3 | |http://wiki.geneontology.org/index.php/THBS3 | ||
|THBS3 | |<font color ="red">THBS3</font> | ||
| | | - | ||
| | | - | ||
| | | - | ||
| no Dicty | | no Dicty | ||
| - | |||
| | | | ||
| done (6) | |||
|done (3) EXP | |||
| | | | ||
| | |2 of 3 done, Thbs1 in progress | ||
| | |done | ||
| | |done (3) | ||
|- | |- | ||
|} | |} | ||
---- | ---- | ||
Back to [[Reference_Genome_Annotation_Project Reference Genome Main Page]] | Back to [[Reference_Genome_Annotation_Project Reference Genome Main Page]] |
Latest revision as of 16:55, 8 April 2014
January/February 2010 targets
Annotation Progress - High priority targets are in red
link to family members | set label | E.coli | SGD | S. pombe | dictyBase | TAIR | WormBase | Zebrafish | FlyBase | Chicken | MGI | RGD | Human |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
http://wiki.geneontology.org/index.php/ACER2 | ACER2 | - | done (2) | - | 2 genes - no EXP | done (2) | done | no Zfish gene | done (1) | no EXP | done | done | done (2) |
http://wiki.geneontology.org/index.php/ADCY7 | ADCY7 | - | - | - | no Dicty | - | no worm | done (1) | no EXP | done | done | done (2) | |
http://wiki.geneontology.org/index.php/ALOX5AP_RefG | ALOX5AP | - | - | - | 1 gene - no EXP | - | no worm | done (2) | no fly | no EXP | done | done | done (2) |
http://wiki.geneontology.org/index.php/ANGPT1 | ANGPT1 | - | - | - | no Dicty | - | no worm | done (1) | no fly | done | done | done (2) | |
http://wiki.geneontology.org/index.php/ANXA3 | ANXA3 | - | - | - | 1 gene - done | done (2) | done (3/4) | done (4) | done | done | done (2) | ||
http://wiki.geneontology.org/index.php/AQP1 | AQP1 | aqpZ (in progress) | - | - | 5 genes no EXP (aqpA, wacA, done) | 8 (in progress) | done (1) | done | done | done (1) | |||
http://wiki.geneontology.org/index.php/CDKN2 | CDKN2A, CDKN2B | - | - | - | no Dicty | - | no worm | done (1) | no fly | 1 of 3 done, Cdkn2a, 2b in progress | done | done (3) | |
http://wiki.geneontology.org/index.php/COL4A4 | COL4A4 | - | - | - | no Dicty | - | no worm | no zfish gene | no fly | no EXP | done | done | done (1) |
http://wiki.geneontology.org/index.php/DUSP6 | DUSP6 | ynbD (in progress) | done (4) | in progress (2) | 2/7 have EXP, mpl1 done, dupA to finish | done (5) | done | done (2) | 1 of 2 done, Dusp6 in progress | done | done (2) | ||
http://wiki.geneontology.org/index.php/ENG_RefG | ENG | - | - | - | no Dicty | - | no worm | Only Ensembl gene, matches nothing in zfin, done | no fly | in progress | done | done (2) | |
http://wiki.geneontology.org/index.php/GSTT1 | GSTT1 | - | - | - | 2 genes - no EXP | no worm | done (2) | done | done | done (1) | |||
http://wiki.geneontology.org/index.php/HMGB2 | HMGB2 | - | done (6) | - (3 genes here but ortholog predictions inc, not appropriate for annotation tf) | 1 gene, no EXP | - | done (6) | 12 of 14 done, Hmgb1 and Hmgb2 in progress | done | done (2) | |||
http://wiki.geneontology.org/index.php/PLEKHA2 | PLEKHA2 | - | - | - | 1 gene, no EXP | - | no worm | done (1) | no fly | no EXP | done | done | done (2) |
http://wiki.geneontology.org/index.php/S100A13 | S100A13 | - | - | - | no Dicty | - | no worm | done (1) | no fly | no EXP | done | done | done (2) |
http://wiki.geneontology.org/index.php/SERPINB9 | SERPINB9 | - | - | - | no Dicty | - | no worm | no zfish gene | no fly | no Gallus | done | done | done (2) |
http://wiki.geneontology.org/index.php/SERPINE1 | SERPINE1 | - | - | - | no Dicty | - | worm | done (1) | no fly | 1 of 2 done, Serpine1 in progress | done | done (2) | |
http://wiki.geneontology.org/index.php/TAP2_RefG | TAP2 | 2 (mdlA & msbA), to do | done (2) | done (1) | 2 genes (tagA, abcB1), to do | done (2) | done (3) | done (1) no EXP | 2 of 3 done, Tap2 in progress | done | done (3) | ||
http://wiki.geneontology.org/index.php/THBS3 | THBS3 | - | - | - | no Dicty | - | done (6) | done (3) EXP | 2 of 3 done, Thbs1 in progress | done | done (3) |
Back to Reference_Genome_Annotation_Project Reference Genome Main Page