Difference between revisions of "January/February 2010 lung targets"

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[[Category:Lung Development Genes]]
 
==January/February 2010 targets==
 
==January/February 2010 targets==
  
−
Annotation Progress
+
Annotation Progress - <font color ="red"> High priority targets are in red</font>
 
{|border="1" cell spacing="0" cellpadding="5" align="center"
 
{|border="1" cell spacing="0" cellpadding="5" align="center"
 
!link to family members
 
!link to family members
Line 19: Line 20:
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/ACER2
 
|http://wiki.geneontology.org/index.php/ACER2
−
|ACER2
+
|<font color ="red">ACER2</font>
−
|
+
| -
−
|
+
| done (2)
−
|
+
| -
 
| 2 genes - no EXP
 
| 2 genes - no EXP
−
|
+
| done (2)
−
|
+
| done
−
|
+
|no Zfish gene
−
|
+
|done (1)
−
|
+
|no EXP
 +
|done
 
|done
 
|done
−
|
 
 
|done (2)
 
|done (2)
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/ADCY7
 
|http://wiki.geneontology.org/index.php/ADCY7
−
|ADCY7
+
|<font color ="red">ADCY7</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| no Dicty
 
| no Dicty
 +
| -
 +
| no worm
 +
| done (1)
 
|
 
|
−
|
+
|no EXP
−
|
+
|done
−
|
+
|done
−
|
 
−
|
 
−
|
 
 
|done (2)
 
|done (2)
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/ALOX5AP_RefG
 
|http://wiki.geneontology.org/index.php/ALOX5AP_RefG
−
|ALOX5AP
+
|<font color ="red">ALOX5AP</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| 1 gene - no EXP
 
| 1 gene - no EXP
−
|
+
| -
−
|
+
| no worm
−
|
+
| done (2)
−
|
+
|no fly
−
|
+
|no EXP
−
|
+
|done
−
|
+
|done
−
|
+
|done (2)
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/ANGPT1
 
|http://wiki.geneontology.org/index.php/ANGPT1
−
|ANGPT1
+
|<font color ="red">ANGPT1</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| no Dicty
 
| no Dicty
 +
| -
 +
| no worm
 +
| done (1)
 +
|no fly
 
|
 
|
−
|
+
|done
−
|
+
|done
−
|
+
|done (2)
−
|
 
−
|
 
−
|
 
−
|
 
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/ANXA3
 
|http://wiki.geneontology.org/index.php/ANXA3
−
|ANXA3
+
|<font color ="red">ANXA3</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| 1 gene - done
 
| 1 gene - done
 +
| done (2)
 +
| done (3/4)
 +
| done (4)
 
|
 
|
 
|
 
|
−
|
+
|done
−
|
+
|done
−
|
+
|done (2)
−
|
 
−
|
 
−
|
 
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/AQP1
 
|http://wiki.geneontology.org/index.php/AQP1
−
|AQP1
+
|<font color ="red">AQP1
−
|
+
| aqpZ (in progress)
−
|
+
| -
−
|
+
| -
−
| 2/5 genes with EXP (aqpA, wacA, not done)
+
| 5 genes no EXP (aqpA, wacA, done)
−
|
+
| 8 (in progress)
−
|
 
−
|
 
−
|
 
−
|
 
 
|
 
|
 +
| done (1)
 
|
 
|
 
|
 
|
 +
|done
 +
|done
 +
|done (1)
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/CDKN2  
 
|http://wiki.geneontology.org/index.php/CDKN2  
−
|CDKN2A, CDKN2B
+
|<font color ="red">CDKN2A, CDKN2B</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| no Dicty
 
| no Dicty
 +
| -
 +
| no worm
 +
| done (1)
 +
|no fly
 
|
 
|
−
|
+
|1 of 3 done, Cdkn2a, 2b in progress
−
|
+
|done
−
|
 
−
|
 
−
|
 
−
|
 
 
|done (3)
 
|done (3)
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/COL4A4
 
|http://wiki.geneontology.org/index.php/COL4A4
−
|COL4A4
+
|<font color ="red">COL4A4</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| no Dicty
 
| no Dicty
−
|
+
| -
−
|
+
| no worm
−
|
+
| no zfish gene
−
|
+
|no fly
−
|
+
|no EXP
−
|
+
|done
−
|
+
|done
−
|
+
|done (1)
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/DUSP6
 
|http://wiki.geneontology.org/index.php/DUSP6
−
|DUSP6
+
|<font color ="red">DUSP6</font>
−
|
+
| ynbD (in progress)
−
|
+
| done (4)
−
|
+
|in progress (2)
 
| 2/7 have EXP, mpl1 done, dupA to finish
 
| 2/7 have EXP, mpl1 done, dupA to finish
 +
| done (5)
 +
| done
 +
| done (2)
 
|
 
|
 
|
 
|
−
|
+
|1 of 2 done, Dusp6 in progress
−
|
+
|done
−
|
+
|done (2)
−
|
 
−
|
 
−
|
 
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/ENG_RefG
 
|http://wiki.geneontology.org/index.php/ENG_RefG
−
|ENG
+
|<font color ="red">ENG</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| no Dicty
 
| no Dicty
 +
| -
 +
| no worm
 +
| Only Ensembl gene, matches nothing in zfin, done
 +
|no fly
 
|
 
|
−
|
+
|in progress
−
|
+
|done
−
|
 
−
|
 
−
|
 
−
|
 
 
|done (2)
 
|done (2)
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/GSTT1
 
|http://wiki.geneontology.org/index.php/GSTT1
 
|GSTT1
 
|GSTT1
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| 2 genes - no EXP
 
| 2 genes - no EXP
 
|
 
|
 +
| no worm
 +
| done (2)
 
|
 
|
 
|
 
|
−
|
+
|done
−
|
+
|done
−
|
+
|done (1)
−
|
 
−
|
 
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/HMGB2
 
|http://wiki.geneontology.org/index.php/HMGB2
 
|HMGB2
 
|HMGB2
−
|
+
| -
−
|
+
| done (6)
−
|
+
| - (3 genes here but ortholog predictions inc, not appropriate for annotation tf)
 
| 1 gene, no EXP
 
| 1 gene, no EXP
 +
| -
 
|
 
|
 +
| done (6)
 
|
 
|
 
|
 
|
−
|
+
|12 of 14 done, Hmgb1 and Hmgb2 in progress
−
|
+
|done
−
|
+
|done (2)
−
|
 
−
|
 
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/PLEKHA2
 
|http://wiki.geneontology.org/index.php/PLEKHA2
−
|PLEKHA2
+
|<font color ="red">PLEKHA2</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
|1 gene, no EXP
 
|1 gene, no EXP
−
|
+
| -
−
|
+
| no worm
−
|
+
| done (1)
−
|
+
|no fly
−
|
+
|no EXP
−
|
+
|done
−
|
+
|done
 
|done (2)
 
|done (2)
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/S100A13
 
|http://wiki.geneontology.org/index.php/S100A13
−
|S100A13
+
|<font color ="red">S100A13</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| no Dicty
 
| no Dicty
−
|
+
| -
−
|
+
| no worm
−
|
+
| done (1)
−
|
+
|no fly
−
|
+
|no EXP
−
|
+
|done
−
|
+
|done
 
|done (2)
 
|done (2)
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/SERPINB9
 
|http://wiki.geneontology.org/index.php/SERPINB9
−
|SERPINB9
+
|<font color ="red">SERPINB9</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| no Dicty
 
| no Dicty
−
|
+
| -
−
|
+
| no worm
−
|
+
| no zfish gene
−
|
+
|no fly
−
|
+
|no Gallus
−
|
+
|done
−
|
+
|done
−
|
+
|done (2)
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/SERPINE1
 
|http://wiki.geneontology.org/index.php/SERPINE1
 
|SERPINE1
 
|SERPINE1
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| no Dicty
 
| no Dicty
 +
| -
 +
| worm
 +
| done (1)
 +
|no fly
 
|
 
|
−
|
+
|1 of 2 done, Serpine1 in progress
−
|
+
|done
−
|
+
|done (2)
−
|
 
−
|
 
−
|
 
−
|
 
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/TAP2_RefG
 
|http://wiki.geneontology.org/index.php/TAP2_RefG
−
|TAP2
+
|<font color ="red">TAP2</font>
−
|
+
| 2 (mdlA & msbA), to do
−
|
+
| done (2)
−
|
+
| done (1)
 
| 2 genes (tagA, abcB1), to do
 
| 2 genes (tagA, abcB1), to do
 +
| done (2)
 
|
 
|
 +
| done (3)
 +
|done (1) no EXP
 
|
 
|
−
|
+
|2 of 3 done, Tap2 in progress
−
|
+
|done
−
|
+
|done (3)
−
|
 
−
|
 
−
|
 
 
|-
 
|-
 
|http://wiki.geneontology.org/index.php/THBS3
 
|http://wiki.geneontology.org/index.php/THBS3
−
|THBS3
+
|<font color ="red">THBS3</font>
−
|
+
| -
−
|
+
| -
−
|
+
| -
 
| no Dicty
 
| no Dicty
 +
| -
 
|
 
|
 +
| done (6)
 +
|done (3) EXP
 
|
 
|
−
|
+
|2 of 3 done, Thbs1 in progress
−
|
+
|done
−
|
+
|done (3)
−
|
 
−
|
 
−
|
 
 
|-
 
|-
 
|}
 
|}
 
----
 
----
 
Back to [[Reference_Genome_Annotation_Project Reference Genome Main Page]]
 
Back to [[Reference_Genome_Annotation_Project Reference Genome Main Page]]

Latest revision as of 12:55, 8 April 2014

January/February 2010 targets

Annotation Progress - High priority targets are in red

link to family members set label E.coli SGD S. pombe dictyBase TAIR WormBase Zebrafish FlyBase Chicken MGI RGD Human
http://wiki.geneontology.org/index.php/ACER2 ACER2 - done (2) - 2 genes - no EXP done (2) done no Zfish gene done (1) no EXP done done done (2)
http://wiki.geneontology.org/index.php/ADCY7 ADCY7 - - - no Dicty - no worm done (1) no EXP done done done (2)
http://wiki.geneontology.org/index.php/ALOX5AP_RefG ALOX5AP - - - 1 gene - no EXP - no worm done (2) no fly no EXP done done done (2)
http://wiki.geneontology.org/index.php/ANGPT1 ANGPT1 - - - no Dicty - no worm done (1) no fly done done done (2)
http://wiki.geneontology.org/index.php/ANXA3 ANXA3 - - - 1 gene - done done (2) done (3/4) done (4) done done done (2)
http://wiki.geneontology.org/index.php/AQP1 AQP1 aqpZ (in progress) - - 5 genes no EXP (aqpA, wacA, done) 8 (in progress) done (1) done done done (1)
http://wiki.geneontology.org/index.php/CDKN2 CDKN2A, CDKN2B - - - no Dicty - no worm done (1) no fly 1 of 3 done, Cdkn2a, 2b in progress done done (3)
http://wiki.geneontology.org/index.php/COL4A4 COL4A4 - - - no Dicty - no worm no zfish gene no fly no EXP done done done (1)
http://wiki.geneontology.org/index.php/DUSP6 DUSP6 ynbD (in progress) done (4) in progress (2) 2/7 have EXP, mpl1 done, dupA to finish done (5) done done (2) 1 of 2 done, Dusp6 in progress done done (2)
http://wiki.geneontology.org/index.php/ENG_RefG ENG - - - no Dicty - no worm Only Ensembl gene, matches nothing in zfin, done no fly in progress done done (2)
http://wiki.geneontology.org/index.php/GSTT1 GSTT1 - - - 2 genes - no EXP no worm done (2) done done done (1)
http://wiki.geneontology.org/index.php/HMGB2 HMGB2 - done (6) - (3 genes here but ortholog predictions inc, not appropriate for annotation tf) 1 gene, no EXP - done (6) 12 of 14 done, Hmgb1 and Hmgb2 in progress done done (2)
http://wiki.geneontology.org/index.php/PLEKHA2 PLEKHA2 - - - 1 gene, no EXP - no worm done (1) no fly no EXP done done done (2)
http://wiki.geneontology.org/index.php/S100A13 S100A13 - - - no Dicty - no worm done (1) no fly no EXP done done done (2)
http://wiki.geneontology.org/index.php/SERPINB9 SERPINB9 - - - no Dicty - no worm no zfish gene no fly no Gallus done done done (2)
http://wiki.geneontology.org/index.php/SERPINE1 SERPINE1 - - - no Dicty - worm done (1) no fly 1 of 2 done, Serpine1 in progress done done (2)
http://wiki.geneontology.org/index.php/TAP2_RefG TAP2 2 (mdlA & msbA), to do done (2) done (1) 2 genes (tagA, abcB1), to do done (2) done (3) done (1) no EXP 2 of 3 done, Tap2 in progress done done (3)
http://wiki.geneontology.org/index.php/THBS3 THBS3 - - - no Dicty - done (6) done (3) EXP 2 of 3 done, Thbs1 in progress done done (3)

Back to Reference_Genome_Annotation_Project Reference Genome Main Page

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