Jun2008 ontology report: Difference between revisions
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**Signal transduction overhaul continuing; latest notes at [[Signaling_Meeting_Minutes_April_2008_-]] (Jen, David) | **Signal transduction overhaul continuing; latest notes at [[Signaling_Meeting_Minutes_April_2008_-]] (Jen, David) | ||
**Drug transport (part of [[Steve_Oliver%27s_Transport_Group#3rd_June.2C_2008|latest round of transport work]]) (Jen, with Paul Dobson) | **Drug transport (part of [[Steve_Oliver%27s_Transport_Group#3rd_June.2C_2008|latest round of transport work]]) (Jen, with Paul Dobson) | ||
**More new terms for PAMGO (Jane) | |||
**Several things continuing as reported in [[May2008_report|May]]. | **Several things continuing as reported in [[May2008_report|May]]. | ||
***Regulates relationships for multi-organism processes (Jane) | ***Regulates relationships for multi-organism processes (Jane) | ||
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*Advocacy/outreach | *Advocacy/outreach | ||
**Talk on using GO for enrichment analysis for Wellcome Advanced Course 2008, including demo of new AmiGO tools (Jane) | |||
**Aspergillus annotation workshop planning (Jen, Steve Oliver) | **Aspergillus annotation workshop planning (Jen, Steve Oliver) | ||
**AmiGO working group planning continues | **AmiGO 1.5.1 patch released | ||
**AmiGO working group planning for next release continues | |||
**Continuing work on tool for GO Tools web page (Amelia & Jane) | **Continuing work on tool for GO Tools web page (Amelia & Jane) | ||
**Moodle training (Jen) | **Moodle training (Jen) | ||
Line 51: | Line 54: | ||
*Anything else | *Anything else | ||
** | **Invited talk at RSC (Midori) | ||
**GO bibliography has 2028 entries | **GO bibliography has 2028 entries | ||
Revision as of 08:26, 1 July 2008
Ontology Development & GO Editorial Office Report - June 2008
I. Ontology Development
- SourceForge
- Items opened: 77
- Items closed: 92
- GO Eds: 54
- MOD curators: 25 (details in Appendix 1)
- GO Ed/MOD collaborations: 13 (details in Appendix 2)
- Items still open: 241
- assigned, GO Eds: 66
- assigned, MOD curators: 101
- unassigned: 74
- Content items resolved
- Some specific fixes for electron transport terms
- Several SourceForge items resolved
- Content items in progress
- Considerable progress on peptidase MF terms (Midori, Colin, Peter, Ben, MEROPS)
- Signal transduction overhaul continuing; latest notes at Signaling_Meeting_Minutes_April_2008_- (Jen, David)
- Drug transport (part of latest round of transport work) (Jen, with Paul Dobson)
- More new terms for PAMGO (Jane)
- Several things continuing as reported in May.
- Regulates relationships for multi-organism processes (Jane)
- Taxon links (Jen, Chris)
- Function-process links for electron transport, metabolic pathways (Jen, Harold, et al.)
- Various SourceForge items
- IMG mapping update in progress (Jane)
- Mailing list created for those ontology developers who use OBO-Edit directly and commit [currently_favored_go].obo to GO CVS
See monthly report in CVS for ontology statistics.
II. GO Editorial Office activities not represented in part I
- Amelia at Berkeley
- OBO-Edit working group:
- Bug testing and documentation for OBO-Edit 2.0 continue
- Jen doing further work on the GraphViz viewer
- Exploring possibilities for GO cross-products - OBO-Edit 1 vs. 2
- Advocacy/outreach
- Talk on using GO for enrichment analysis for Wellcome Advanced Course 2008, including demo of new AmiGO tools (Jane)
- Aspergillus annotation workshop planning (Jen, Steve Oliver)
- AmiGO 1.5.1 patch released
- AmiGO working group planning for next release continues
- Continuing work on tool for GO Tools web page (Amelia & Jane)
- Moodle training (Jen)
- Publications
- Erika and Jen have sent in a revision of the muscle content meeting paper, with responses to reviewer's comments
- Anything else
- Invited talk at RSC (Midori)
- GO bibliography has 2028 entries
Appendix 1: MOD curators' SF items 1407482 David, Tanya 1422502 Karen C, Val 1853346 Karen C 1891946 Karen C 1898010 Tanya 1917308 David, Tanya 1945292 David, Tanya 1951610 David, Tanya 1953385 David, Tanya 1953394 Karen C 1954078 David, Tanya 1960654 Tanya 1962447 David, Tanya 1965904 David, Tanya 1974638 David, Tanya 1974648 David, Tanya 1974983 David 1979442 David, Tanya 1981940 David, Tanya 1982457 Donghui 1982660 David, Tanya 1985804 David, Tanya 1993018 David, Tanya 1999361 Karen C 2001811 David, Tanya Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved 1219716 Val, Eurie, Jodi 1432785 Nick, Karen C 1508524 Rama 1536003 Rama, Val 1942430 Val 1965563 Karen C 1979776 Jim, Peter 1982098 Val, Eurie, Jodi 1989114 Rama, Val 1994085 Val, Chris 1995835 electron transport wg 1995896 Val, Maria 1996807 Harold, Karen C, Val (Note: "MOD curator" is shorthand for any non-GO-Ed curator)