https://wiki.geneontology.org/index.php?title=Jun2009_ontology_report&feed=atom&action=history
Jun2009 ontology report - Revision history
2024-03-28T22:53:34Z
Revision history for this page on the wiki
MediaWiki 1.40.0
https://wiki.geneontology.org/index.php?title=Jun2009_ontology_report&diff=21881&oldid=prev
Midori at 11:14, 10 September 2009
2009-09-10T11:14:03Z
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>***[[Taxon-GO_Implementation_April_2009_onwards#1st_June|Taxon triggers]] - workflow improved; implementation in progress</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>***[[Taxon-GO_Implementation_April_2009_onwards#1st_June|Taxon triggers]] - workflow improved; implementation in progress</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">*</del>***Work on branching organ development (David) </div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>***Work on branching organ development (David) </div></td></tr>
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Midori
https://wiki.geneontology.org/index.php?title=Jun2009_ontology_report&diff=20991&oldid=prev
Midori: /* II. GO Editorial Office activities not represented in part I */
2009-07-31T14:50:53Z
<p><span dir="auto"><span class="autocomment">II. GO Editorial Office activities not represented in part I</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:50, 31 July 2009</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*OBO-Edit working group:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*OBO-Edit working group:</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>**See <del style="font-weight: bold; text-decoration: none;">weeting </del>minutes from June [[OEWG_20090602|2]], [[OEWG_20090609|9]], [[OEWG_20090618|18]] and [[OEWG_20090625|25]], and [[OBO-Edit_development_Monthly_Report%2C_June_2009|monthly report]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>**See <ins style="font-weight: bold; text-decoration: none;">meeting </ins>minutes from June [[OEWG_20090602|2]], [[OEWG_20090609|9]], [[OEWG_20090618|18]] and [[OEWG_20090625|25]], and [[OBO-Edit_development_Monthly_Report%2C_June_2009|monthly report]]</div></td></tr>
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Midori
https://wiki.geneontology.org/index.php?title=Jun2009_ontology_report&diff=20990&oldid=prev
Midori at 13:35, 31 July 2009
2009-07-31T13:35:33Z
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
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Midori
https://wiki.geneontology.org/index.php?title=Jun2009_ontology_report&diff=20699&oldid=prev
Midori: New page: Ontology Development & GO Editorial Office Report - May 2009 ===I. Ontology Development=== *SourceForge **Items opened: 91 **Items closed: 112 (3 duplicates and one other deleted) **Items...
2009-07-01T11:59:39Z
<p>New page: Ontology Development & GO Editorial Office Report - May 2009 ===I. Ontology Development=== *SourceForge **Items opened: 91 **Items closed: 112 (3 duplicates and one other deleted) **Items...</p>
<p><b>New page</b></p><div>Ontology Development & GO Editorial Office Report - May 2009<br />
<br />
===I. Ontology Development===<br />
*SourceForge<br />
**Items opened: 91<br />
**Items closed: 112 (3 duplicates and one other deleted)<br />
**Items still open: 242<br />
***assigned, GO Eds: 85<br />
***assigned, MOD curators: 103<br />
***unassigned: 54<br />
<br />
*Chris visited the EBI GO group on June 10th-11th; the meeting was very productive indeed. The [[CJM_EBI_Visit_June_2009|minutes]] go into more detail, but these are the highlights:<br />
**We're about to [[CJM_EBI_Visit_June_2009#has_part|test using the has_part relation]] in a scratch file; Amelia has done [http://www.ebi.ac.uk/~aji/go/GO.ontology.relationships.shtml draft documentation].<br />
**We worked out a [[CJM_EBI_Visit_June_2009#Status_overview_and_release_plan|plan to add internal cross-products]] to the go_write (and therefore also go_ext) file soon. The first ones to go in will be the 'regulates' xps that David & Tanya are working with.<br />
<br />
*Content items resolved<br />
**Several SourceForge items resolved<br />
<br />
*Content items in progress<br />
**Cross-products - see notes above<br />
**Has_part relationship - see notes above<br />
**Continuing to add [[Function-Process_Links|function-process]] part-of links in gene_ontology_write.obo and gene_ontology_ext.obo<br />
**Work continues on overhauling [[Virus_terms|terms related to viruses]]; mailing list created<br />
**[[Signaling|Signal transduction]] overhaul continuing; content meeting date set (Jen and experts including Sandra Orchard)<br />
**Also continuing<br />
***Additional progress on [[Cellular_component_processes|Cellular component organization and biogenesis]], in light of internal cross-products<br />
***[[Taxon-GO_Implementation_April_2009_onwards#1st_June|Taxon triggers]] - workflow improved; implementation in progress<br />
****Work on branching organ development (David) <br />
***Electron transport (working group)<br />
***Relationships among multi-organism process regulation terms (Jane, Chris)<br />
**Quality control continues as usual - reports generated by Chris<br />
***Regulation - also see above (David, Tanya)<br />
***Multiple part_of parents (several GO curators, especially Tanya & David)<br />
**Various SourceForge items<br />
<br />
*Manuscript in preparation for paper on the regulates relationships on hold due to vacations, meetings, etc. (Midori & Jane so far; David, Chris and Tanya to join in soon)<br />
<br />
*Meetings<br />
**Jane gave talk for OBO Foundry meeting (June)<br />
***(Other GO people also attended; they can fill in anything they see fit here.)<br />
**David planning for Society for Developmental Biology meeting (July; poster)<br />
<br />
*Reminder: plan to retire .ontology file format - see [[Managers_21Jan09]] and [[GO_Timeline]]<br />
<br />
See monthly report in CVS for ontology statistics.<br />
<br />
===II. GO Editorial Office activities not represented in part I===<br />
<br />
*OBO-Edit working group:<br />
**See weeting minutes from June [[OEWG_20090602|2]], [[OEWG_20090609|9]], [[OEWG_20090618|18]] and [[OEWG_20090625|25]], and [[OBO-Edit_development_Monthly_Report%2C_June_2009|monthly report]]<br />
<br />
*Advocacy/outreach (Jane, Jen)<br />
**EBI outreach team planning plant bioinformatics course; Jen contributing GO coverage<br />
**See [[Outreach_June_2009_Report|monthly report]]<br />
<br />
*Meetings<br />
**OBO Foundry meeting June 7-8 (Jane)<br />
**Chris' visit to EBI office (see above)<br />
<br />
*Publications<br />
**PAMGO paper "Applying the Gene Ontology in Microbial Annotation" accepted by Trends in Microbiology for publication in July (PAMGO group, plus Jane)<br />
<br />
*Anything else<br />
**GO bibliography has 2728 entries<br />
<br />
[[Combined_Ontology_Development_and_GO_Editorial_Office_reports|Back to list]]<br />
<br />
[[Category:Reports]]</div>
Midori