June2006 GO Ed report: Difference between revisions
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Latest revision as of 11:43, 20 August 2009
GO Editorial Office Report - June 2006
SourceForge items Items opened 39 Closed by editorial office 27 (note: no SF item closed outside GO-Ed. this month; see end of report for details and for non-GO-Ed contributors to items we closed) Items in progress, assigned to editorial office 74 See monthly report in CVS for ontology statistics. Erika's project: 1) Open SF items: 1516382? synaptic transmission regulation terms 1501514 excitatory and inhibitory synapse 1501105 postsynaptic active zone 1501089 Excitatory postsynaptic potential 2) Complete the annotation for kainate receptors. 3) Attend the Neurobiology Content Meeting 4) Attend the First Systems Biology Symposium/Workshop at EBI 5) Start to work on the SF item 1494526 Drug Terms in the GO Create a new interest group Response-to-drug Content topics in progress: Brain development additions from content meeting (Jen, David Hill) 'Rehoming' unlocalized protein complexes Changes to 'response to drug' node (Erika, Jen, Alex Diehl) Contractile rings, cleavage furrow, septin structures (Midori, Karen Christie, Val Wood, et al.) Content topics resolved: Several small things for SourceForge items Content working group update: A draft of a merged summary document has been sent around, and modest changes made. David will invite the remaining 3 or 4 members, and then we'll schedule regular chats. OBO-Edit working group update: As noted, OBO-Edit 1.000 released June 1st; 1.001 update released June 8 Feature requests being evaluated and prioritized Demo 'release' (beta) with graph-based editing groundwork Publication(s) in preparation AmiGO working group (Jane, Amelia): More mockups (A); conf call Advocacy group (Jane): FAQ actively developed again; some additions/updates (Jane; also a few others in advocacy group) Collecting items for August newsletter Annotation outreach (Jen): Annotation tool discussion GO Associate discussion Group priorities for rest of 2006 A bit of work with PseudoCAP group Conferences/meetings Workshop on RDF, Metadata and Ontologies, Edinburgh, June 7-9 (Midori, general GO talk with a bit of emphasis on update procedures); see http://wiki.esi.ac.uk/RDF%2C_Ontologies_and_Meta-Data_Workshop Neurobiology content meeting, Bar Harbor, June 15-16 (Jen, Erika, Midori from GOEd) Excellent summary in June 21 conf call minutes (from David, transcribed by Eurie) Additions from Jen: preparatory work on meeting topics; prepared & presented general GO talk; she did the during-meeting editing and is donig most of the post-meeting editing; also a few small related tasks One-hour chat with visitors to EBI: Rob Stierum (senior fellow), Peter Hendriksen (post-doc) and Andre Boorsma (post-doc), who make up the bioinformatic team of the Netherlands Toxicogenomics Centre (www.toxicogenomics-centre.nl), a collaboration of several research groups in the Netherlands led by Maastricht University. The session was mainly them asking us and GOA about various asspects of GO, other ontologies, and annotation, but they might have some suggestions for GOA that could feed into priority-setting for annotation. Visit from Marina Brilman, who has a background in law and is doing research in classificatory practices and different norms used in property law concerning biological products or processes; she had lots of interesting questions about GO. Continued planning for upcoming meetings, including annotation camp, PAMGO, and GO Users meeting (user meeting registration and abstract submission now open) Publication Book chapter submitted: 'Parasites and GO' for bioinformatics text book for parasitologists (Jane, with Matt Berriman) Continued contact with Colin Batchelor, RSC publishing, for updates on their progress; day of GO training for RSC editors planned (Sept. 29) figs2go & ko2go mappings in progress (Jane, with MA on ko2go) mesh2go mapping setup (including software) in progress (Jane) Some updates to web pages (Amelia) A few queries on the mailing lists (mainly Jane) GO Bibliography now has 893 entries Appendix 1: input from others on SF items closed this month 1065289 - development interest group 1203227 - Sue Rhee 1432216 - Val Wood, Eurie Hong, Nick Stover, Nick Thomson (Sanger PSU) 1447142 - Alex Diehl 1490151 - Chandra Theesfeld, Val Wood 1490810 - Rama Balakrishnan 1498539 - Michelle Gwinn 1499764 - Michelle Gwinn