Kidney - Agenda for Kidney Development Ontology Content Meeting: Difference between revisions
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[[Category:Ontology Content- Archived]] | |||
Please suggest agenda items, relevant papers and other information relating to kidney development GO terms that you would like discussed at this workshop, to enable us to form an agenda. | Please suggest agenda items, relevant papers and other information relating to kidney development GO terms that you would like discussed at this workshop, to enable us to form an agenda. | ||
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== '''Participants''' == | == '''Participants''' == | ||
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| Dr Yasmin Alam-Faruque (GOA/EBI)<br/>Dr Emily Dimmer (GOA/EBI) <br/>Dr Rachael Huntley (GOA/EBI) <br/>Dr Rebecca Foulger (UniProt/Xenopus/EBI) <br/>Dr Susan Tweedie (Flybase/EBI) <br/>Dr Doug Howe (ZFIN/USA) (via Skype) | | Dr Yasmin Alam-Faruque (GOA/EBI)<br/>Dr Emily Dimmer (GOA/EBI) <br/>Dr Rachael Huntley (GOA/EBI) <br/>Dr Rebecca Foulger (UniProt/Xenopus/EBI) <br/>Dr Susan Tweedie (Flybase/EBI) <br/>Dr Doug Howe (ZFIN/USA) (via Skype) | ||
| Dr David Hill (Jax/USA) <br/>Dr Midori Harris (EBI) <br/>Dr Jane Lomax (EBI) | | Dr David Hill (Jax/USA) <br/>Dr Midori Harris (EBI) <br/>Dr Jane Lomax (EBI) | ||
| Professor Adrian Woolf (ICH) <br/>Dr Duncan Davidson (GUDMAP)<br/>Professor Randall Thomas (IBISC CNRS)<br/>Professor Jamie Davies (GUDMAP) (available pm via phone/email)<br/> | | Professor Adrian Woolf (ICH) <br/>Dr Duncan Davidson (GUDMAP)<br/>Professor Randall Thomas (IBISC CNRS)<br/>Professor Jamie Davies (GUDMAP) (available pm via phone/email if needed)<br/>Dr Bernard de Bono (Virtual Physiological Human, EBI)<br/> | ||
|} | |} | ||
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*'''Kidney Development Review Papers:''' | *'''Kidney Development Review Papers:''' | ||
** '''Mammalian reviews:''' | ** '''Mammalian reviews:''' | ||
*PMID 19906853 Advances in early kidney specification, development and patterning. Dressler M 2009. Talks about the essential roles of intrinsic nuclear factors and secreted signaling molecules in specifying renal epithelial stem cells and their self-renewal, in driving the complex dynamics of epithelial cell branching morphogenesis, and in nephron patterning. | ***PMID 19906853 Advances in early kidney specification, development and patterning. Dressler M 2009. Talks about the essential roles of intrinsic nuclear factors and secreted signaling molecules in specifying renal epithelial stem cells and their self-renewal, in driving the complex dynamics of epithelial cell branching morphogenesis, and in nephron patterning. | ||
*PMID 15554941 Transcriptional control of kidney development. Bouchard M. 2004. Talks about genes involved in nephric lineage specification (Pax2/Pax8/Lim1/Bmp4/Wt1/GDNF1/Eya1/Foxc1); metanephros development - UB positioning, induction, nephron induction, ureter branching, Stromal cell differentiation(Gdnf1/Eya1/Foxc1/2/Slit2/Robo2/Bmp4/Pax2/Hox11(HoxA11/C11/D11)/ Sall1/Wt1/Six1/Wnt4/Emx2/Gata3/BF2/Pod1/Pbx21. | ***PMID 15554941 Transcriptional control of kidney development. Bouchard M. 2004. Talks about genes involved in nephric lineage specification (Pax2/Pax8/Lim1/Bmp4/Wt1/GDNF1/Eya1/Foxc1); metanephros development - UB positioning, induction, nephron induction, ureter branching, Stromal cell differentiation(Gdnf1/Eya1/Foxc1/2/Slit2/Robo2/Bmp4/Pax2/Hox11(HoxA11/C11/D11)/ Sall1/Wt1/Six1/Wnt4/Emx2/Gata3/BF2/Pod1/Pbx21. | ||
*PMID 15380247 Recent genetic studies of mouse kidney development. Yu J, McMahon AP, Valerius MT. 2004. Has a nice diagram of the stages of nephron formation on p.551. Also lists genes investigated with particular molecular regulation of outgrowth of the uteric bud and regulation of tubulogenesis (Table 1; p552 - Gdf1, Six1, Slit2/Robo2, Wnt1, Fras1+Grip1, Pod1, Pbx1, Brn1, Psen1/2). | ***PMID 15380247 Recent genetic studies of mouse kidney development. Yu J, McMahon AP, Valerius MT. 2004. Has a nice diagram of the stages of nephron formation on p.551. Also lists genes investigated with particular molecular regulation of outgrowth of the uteric bud and regulation of tubulogenesis (Table 1; p552 - Gdf1, Six1, Slit2/Robo2, Wnt1, Fras1+Grip1, Pod1, Pbx1, Brn1, Psen1/2). | ||
*PMID 16760375 Role of transcriptional networks in coordinating early events during kidney development. Boyle S, de Caestecker Mark. 2006. Has nice diagrams of stages of early mammalian kidney development. Reviews transcription factors in mesenephric mesenchyme: Eya1/ Foxc1/2/ Hoxa/c/d11/ Pax2/ Pbx1/ Rar-alpha/beta2/ Sall1/ Six1/ Wt1. | ***PMID 16760375 Role of transcriptional networks in coordinating early events during kidney development. Boyle S, de Caestecker Mark. 2006. Has nice diagrams of stages of early mammalian kidney development. Reviews transcription factors in mesenephric mesenchyme: Eya1/ Foxc1/2/ Hoxa/c/d11/ Pax2/ Pbx1/ Rar-alpha/beta2/ Sall1/ Six1/ Wt1. | ||
*PMID 12094231 Coordinating early kidney development: lessons from gene targeting. Vainio S, Lin Y. 2002. Nice diagrams of kidney development. List of genes essential for early kidney development (Transcription Factors: Emx2/Eya1/Foxc1/Foxd1/Pax2/Rara,Rarb/Sall1/Wt1; Growth factors: Bmp4/Bmp7/Fgf7/Gdnf/Wnt4; Growth factors/receptors: Gfra1/Notch2/Ret; Proteoglycans and their biosynthetic enzymes: Hs2st/Gpc3). | ***PMID 12094231 Coordinating early kidney development: lessons from gene targeting. Vainio S, Lin Y. 2002. Nice diagrams of kidney development. List of genes essential for early kidney development (Transcription Factors: Emx2/Eya1/Foxc1/Foxd1/Pax2/Rara,Rarb/Sall1/Wt1; Growth factors: Bmp4/Bmp7/Fgf7/Gdnf/Wnt4; Growth factors/receptors: Gfra1/Notch2/Ret; Proteoglycans and their biosynthetic enzymes: Hs2st/Gpc3). | ||
*'''Kidney Development Websites:''' | * '''Other resources:''' | ||
** Mouse Anatomy Browser - '''[http://www.informatics.jax.org/searches/AMA.cgi?query=kidney]''' | **'''Kidney Development Websites:''' | ||
*** Mouse Anatomy Browser - '''[http://www.informatics.jax.org/searches/AMA.cgi?query=kidney]''' | |||
** FMA human anatomy browser- '''[http://fme.biostr.washington.edu:8089/FME/index.html]''' | *** FMA human anatomy browser- '''[http://fme.biostr.washington.edu:8089/FME/index.html]''' | ||
*** GUDMAP browser - '''[http://www.gudmap.org/gudmap/pages/database_homepage.html]''' | |||
** GUDMAP browser - '''[http://www.gudmap.org/gudmap/pages/database_homepage.html]''' | ****Metanephros '''[http://www.gudmap.org/Organ_Summaries/Metanephros/Metanephros.html]''' | ||
****renal vesicle '''[http://www.gudmap.org/Organ_Summaries/Metanephros/Metanephros_RV.html]''' | |||
* Kidney Development GO wiki [http://wiki.geneontology.org/index.php/Kidney_Development] | ** Kidney Development GO wiki [http://wiki.geneontology.org/index.php/Kidney_Development] | ||
** Loop of Henle GO Cocuration wiki [http://wiki.geneontology.org/index.php/Loop_of_Henle_Cocuration] | |||
* Loop of Henle GO Cocuration wiki [http://wiki.geneontology.org/index.php/Loop_of_Henle_Cocuration] | |||
== '''Notes''' == | == '''Notes''' == | ||
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* Keep an eye on definition compatability across species/taxa | * Keep an eye on definition compatability across species/taxa | ||
== Ontology Editing == | |||
Midori Harris and David Hill are working through terms added during the meeting and the SF items. The first changes from the meeting were committed to the live GO on February 8, 2010, in gene_ontology_write.obo revision 1.1010. | |||
The changes committed are summarized below and in the CVS log, and shown in detail in two diff files, [[initial_kdm_obodiff|one generated by the obodiff utility]] and [[initial_kdm_unix_diff|the other by the UNIX diff utility]]. | |||
'''February 8, 2010''' | |||
<pre> | |||
2010-02-08 | |||
confirmed definition of 'kidney development' GO:0001822; adjusted parentage | |||
definition adjustments: | |||
GO:0001759 induction of an organ | |||
GO:0061005 cell differentiation involved in kidney development | |||
added synonyms: | |||
GO:0061004 pattern specification involved in kidney development | |||
new terms: | |||
GO:0090183 regulation of kidney development | |||
GO:0090184 positive regulation of kidney development | |||
GO:0090185 negative regulation of kidney development | |||
GO:0090189 regulation of branching involved in ureteric bud morphogenesis | |||
GO:0090190 positive regulation of branching involved in ureteric bud morphogenesis | |||
GO:0090191 negative regulation of branching involved in ureteric bud morphogenesis | |||
GO:0090192 regulation of glomerulus development | |||
GO:0090193 positive regulation of glomerulus development | |||
GO:0090194 negative regulation of glomerulus development | |||
GO:0061149 BMP signaling pathway involved in ureter morphogenesis | |||
GO:0061151 BMP signaling pathway involved in renal system segmentation | |||
GO:0061150 renal system segmentation | |||
GO:0003338 metanephros morphogenesis | |||
GO:0003337 mesenchymal to epithelial transition involved in metanephros morphogenesis | |||
GO:0003339 regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis | |||
GO:0003340 negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis | |||
GO:0090094 metanephric cap mesenchymal cell proliferation | |||
GO:0090095 regulation of metanephric cap mesenchymal cell proliferation | |||
GO:0090096 positive regulation of metanephric cap mesenchymal cell proliferation | |||
GO:2000729 positive regulation of mesenchymal cell proliferation involved in ureter development | |||
GO:0071893 BMP signaling pathway involved in nephric duct formation | |||
GO:0035787 cell migration involved in kidney development | |||
GO:0035788 cell migration involved in metanephros development | |||
GO:0035789 metanephric mesenchymal cell migration | |||
GO:0035790 platelet-derived growth factor receptor-alpha signaling pathway | |||
GO:0035791 platelet-derived growth factor receptor-beta signaling pathway | |||
GO:2000584 negative regulation of platelet-derived growth factor receptor-alpha signaling pathway | |||
GO:2000591 positive regulation of metanephric mesenchymal cell migration | |||
GO:0035793 positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway | |||
GO:2000703 negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation | |||
GO:2000704 positive regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation | |||
GO:2000702 regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation | |||
GO:2001012 mesenchymal cell differentiation involved in renal system development | |||
GO:0061437 renal system vasculature development ; | |||
GO:0061438 renal system vasculature morphogenesis ; | |||
GO:0061439 kidney vasculature morphogenesis ; | |||
GO:0061440 kidney vasculature development ; | |||
GO:0061441 renal artery morphogenesis ; | |||
GO:0036056 filtration diaphragm ; | |||
GO:0036057 slit diaphragm ; | |||
GO:0036058 filtration diaphragm assembly ; | |||
GO:0036059 nephrocyte diaphragm assembly ; | |||
GO:0036060 slit diaphragm assembly ; | |||
GO:0072001 renal system development | |||
GO:0072002 Malpighian tubule development | |||
GO:0072003 kidney rudiment formation | |||
GO:0072004 kidney field specification | |||
GO:0072005 maintenance of kidney identity | |||
GO:0072006 nephron development | |||
GO:0072007 mesangial cell differentiation | |||
GO:0072008 glomerular mesangial cell differentiation | |||
GO:0072009 nephron epithelium development | |||
GO:0072010 glomerular epithelium development | |||
GO:0072011 glomerular endothelium development | |||
GO:0072012 glomerulus vasculature development | |||
GO:0072013 glomus development | |||
GO:0072014 proximal tubule development | |||
GO:0072015 glomerular visceral epithelial cell development | |||
GO:0072016 glomerular parietal epithelial cell development | |||
GO:0072017 distal tubule development | |||
GO:0072018 intermediate tubule development | |||
GO:0072019 proximal convoluted tubule development | |||
GO:0072020 proximal straight tubule development | |||
GO:0072021 ascending thin limb development | |||
GO:0072022 descending thin limb development | |||
GO:0072023 thick ascending limb development | |||
GO:0072024 macula densa development | |||
GO:0072025 distal convoluted tubule development | |||
GO:0072026 distal straight tubule development | |||
GO:0072027 connecting tubule development | |||
GO:0072028 nephron morphogenesis | |||
GO:0072029 long nephron development | |||
GO:0072030 short nephron development | |||
GO:0072031 S1 development | |||
GO:0072032 S2 development | |||
GO:0072033 renal vesicle formation | |||
GO:0072034 positive regulation of renal vesicle formation | |||
GO:0072035 pre-tubular aggregate formation | |||
GO:0072036 mesenchymal to epithelial transition involved in renal vesicle formation | |||
GO:0072037 mesenchymal stem cell differentiation involved in nephron morphogenesis | |||
GO:0072038 mesenchymal stem cell maintenance involved in nephron morphogenesis | |||
GO:0072039 regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis | |||
GO:0072040 negative regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis | |||
GO:0072041 positive regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis | |||
GO:0072042 regulation of mesenchymal stem cell proliferation involved in nephron morphogenesis | |||
GO:0072043 regulation of pre-tubular aggregate formation by cell-cell signaling | |||
GO:0072044 collecting duct development | |||
GO:0072045 convergent extension involved in nephron morphogenesis | |||
GO:0072046 establishment of planar polarity involved in nephron morphogenesis | |||
GO:0072047 proximal/distal pattern formation involved in nephron development | |||
GO:0072048 renal system pattern specification | |||
GO:0072049 comma-shaped body morphogenesis | |||
GO:0072050 S-shaped body morphogenesis | |||
GO:0072051 juxtaglomerular apparatus development | |||
GO:0072052 juxtaglomerulus cell differentiation | |||
GO:0072053 renal inner medulla development | |||
GO:0072054 renal outer medulla development | |||
GO:0072055 renal cortex development | |||
GO:0072056 pyramids development | |||
GO:0072057 inner stripe development | |||
GO:0072058 outer stripe development | |||
GO:0072059 cortical collecting duct development | |||
GO:0072060 outer medullary collecting duct development | |||
GO:0072061 inner medullary collecting duct development | |||
GO:0072062 S1 cell differentiation | |||
GO:0072063 short descending thin limb development | |||
GO:0072064 long descending thin limb development | |||
GO:0072065 long descending thin limb bend development | |||
GO:0072066 prebend segment development | |||
GO:0072067 early distal convoluted tubule development | |||
GO:0072068 late distal convoluted tubule development | |||
GO:0072069 DCT cell differentiation | |||
GO:0072070 loop of Henle development | |||
GO:0072071 interstitial cell differentiation | |||
GO:0072072 kidney stroma development | |||
GO:0072073 kidney epithelium development | |||
GO:0072074 kidney mesenchyme development | |||
GO:0072075 metanephric mesenchyme development | |||
GO:0072076 nephrogenic mesenchyme development | |||
GO:0072077 renal vesicle morphogenesis | |||
GO:0072078 nephron tubule morphogenesis | |||
GO:0072079 nephron tubule formation | |||
GO:0072080 nephron tubule development | |||
GO:0072081 specification of nephron tubule identity | |||
GO:0072082 specification of proximal tubule identity | |||
GO:0072083 specification of intermediate tubule identity | |||
GO:0072084 specification of distal tubule identity | |||
GO:0072085 specification of connecting tubule identity | |||
GO:0072086 specification of loop of Henle identity | |||
GO:0072087 renal vesicle development | |||
GO:0072088 nephron epithelium morphogenesis | |||
GO:0072089 stem cell proliferation | |||
GO:0072090 mesenchymal stem cell proliferation involved in nephron morphogenesis | |||
GO:0072091 regulation of stem cell proliferation | |||
GO:0072092 ureteric bud invasion | |||
GO:0072093 metanephric renal vesicle formation | |||
GO:0072094 positive regulation of metanephric renal vesicle formation | |||
GO:0072095 regulation of branch elongation involved in ureteric bud branching | |||
GO:0072096 negative regulation of branch elongation involved in ureteric bud branching | |||
GO:0072097 negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway | |||
GO:0072098 anterior/posterior pattern specification involved in kidney development | |||
GO:0072099 ureteric bud anterior/posterior pattern specification | |||
GO:0072100 specification of ureteric bud anterior/posterior symmetry | |||
GO:0072101 specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway | |||
GO:0072102 glomerulus morphogenesis | |||
GO:0072103 glomerulus vasculature morphogenesis | |||
GO:0072104 glomerular capillary formation | |||
GO:0072105 ureteric peristalsis | |||
GO:0072106 regulation of ureteric bud formation | |||
GO:0072107 positive regulation of ureteric bud formation | |||
GO:0072108 positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis | |||
GO:0072109 glomerular mesangium development | |||
GO:0072110 glomerular mesangial cell proliferation | |||
GO:0072111 cell proliferation involved in kidney development | |||
GO:0072112 glomerular visceral epithelial cell differentiation | |||
GO:0072113 head kidney development | |||
GO:0072114 pronephros morphogenesis | |||
GO:0072115 head kidney morphogenesis | |||
GO:0072116 pronephros formation | |||
GO:0072117 head kidney formation | |||
GO:0072118 pronephros structural organization | |||
GO:0072119 head kidney structural organization | |||
GO:0072120 pronephros maturation | |||
GO:0072121 head kidney maturation | |||
GO:0072122 extraglomerular mesangial cell proliferation | |||
GO:0072123 intraglomerular mesangial cell proliferation | |||
GO:0072124 regulation of glomerular mesangial cell proliferation | |||
GO:0072125 negative regulation of glomerular mesangial cell proliferation | |||
GO:0072126 positive regulation of glomerular mesangial cell proliferation | |||
GO:0072127 renal capsule development | |||
GO:0072128 renal capsule morphogenesis | |||
GO:0072129 renal capsule formation | |||
GO:0072130 renal capsule specification | |||
GO:0072131 kidney mesenchyme morphogenesis | |||
GO:0072132 mesenchyme morphogenesis | |||
GO:0072133 metanephric mesenchyme morphogenesis | |||
GO:0072134 nephrogenic mesenchyme morphogenesis | |||
GO:0072135 kidney mesenchymal cell proliferation | |||
GO:0072136 metanephric mesenchymal cell proliferation | |||
GO:0072137 condensed mesenchymal cell proliferation | |||
GO:0072138 mesenchymal cell proliferation involved in ureteric bud development | |||
GO:0072139 glomerular parietal epithelial cell differentiation | |||
GO:0072140 DCT cell development | |||
GO:0072141 renal interstitial cell development | |||
GO:0072142 juxtaglomerulus cell development | |||
GO:0072143 mesangial cell development | |||
GO:0072144 glomerular mesangial cell development | |||
GO:0072145 S1 cell development | |||
GO:0072146 DCT cell fate commitment | |||
GO:0072147 glomerular parietal epithelial cell fate commitment | |||
GO:0072148 epithelial cell fate commitment | |||
GO:0072149 glomerular visceral epithelial cell fate commitment | |||
GO:0072150 juxtaglomerulus cell fate commitment | |||
GO:0072151 mesangial cell fate commitment | |||
GO:0072152 glomerular mesangial cell fate commitment | |||
GO:0072153 renal interstitial cell fate commitment | |||
GO:0072154 S1 cell fate commitment | |||
GO:0072155 epithelial cell migration involved in nephron tubule morphogenesis | |||
GO:0072156 distal tubule morphogenesis | |||
GO:0072157 epithelial cell migration involved in distal tubule morphogenesis | |||
GO:0072158 proximal tubule morphogenesis | |||
GO:0072159 epithelial cell migration involved in proximal tubule morphogenesis | |||
GO:0072160 nephron tubule epithelial cell differentiation | |||
GO:0072161 mesenchymal cell differentiation involved in kidney development | |||
GO:0072162 metanephric mesenchymal cell differentiation | |||
GO:0072163 mesonephric epithelium development | |||
GO:0072164 mesonephric tubule development | |||
GO:0072165 anterior mesonephric tubule development | |||
GO:0072166 posterior mesonephric tubule development | |||
GO:0072167 specification of mesonephric tubule identity | |||
GO:0072168 specification of anterior mesonephric tubule identity | |||
GO:0072169 specification of posterior mesonephric tubule identity | |||
GO:0072170 metanephric tubule development | |||
GO:0072171 mesonephric tubule morphogenesis | |||
GO:0072172 mesonephric tubule formation | |||
GO:0072173 metanephric tubule morphogenesis | |||
GO:0072174 metanephric tubule formation | |||
GO:0072175 epithelial tube formation | |||
GO:0072176 nephric duct development | |||
GO:0072177 mesonephric duct development | |||
GO:0072178 nephric duct morphogenesis | |||
GO:0072179 nephric duct formation | |||
GO:0072180 mesonephric duct morphogenesis | |||
GO:0072181 mesonephric duct formation | |||
GO:0072182 regulation of nephron tubule epithelial cell differentiation | |||
GO:0072183 negative regulation of nephron tubule epithelial cell differentiation | |||
GO:0072184 renal vesicle progenitor cell differentiation | |||
GO:0072185 metanephric cap development | |||
GO:0072186 metanephric cap morphogenesis | |||
GO:0072187 metanephric cap formation | |||
GO:0072188 metanephric cap specification | |||
GO:0072189 ureter development | |||
GO:0072190 ureter urothelium development | |||
GO:0072191 ureter smooth muscle development | |||
GO:0072192 ureter epithelial cell differentiation | |||
GO:0072193 ureter smooth muscle cell differentiation | |||
GO:0072194 kidney smooth muscle tissue development | |||
GO:0072195 kidney smooth muscle cell differentiation | |||
GO:0072196 pronephros proximal/distal pattern formation | |||
GO:0072197 ureter morphogenesis | |||
GO:0072198 mesenchymal cell proliferation involved in ureter development | |||
GO:0072199 regulation of mesenchymal cell proliferation involved in ureter development | |||
GO:0072200 negative regulation of mesenchymal cell proliferation involved in ureter development | |||
GO:0072201 negative regulation of mesenchymal cell proliferation | |||
GO:0072202 cell differentiation involved in metanephros development | |||
GO:0035787 cell migration involved in kidney development | |||
GO:2000061 regulation of ureter smooth muscle cell differentiation | |||
GO:2000062 negative regulation of ureter smooth muscle cell differentiation | |||
GO:2000063 positive regulation of ureter smooth muscle cell differentiation | |||
GO:0035799 ureter maturation | |||
GO:0035849 nephric duct elongation | |||
GO:0035850 epithelial cell differentiation involved in kidney development | |||
GO:2000696 regulation of epithelial cell differentiation involved in kidney development | |||
GO:2000697 negative regulation of epithelial cell differentiation involved in kidney development | |||
GO:2000698 positive regulation of epithelial cell differentiation involved in kidney development | |||
GO:2000699 fibroblast growth factor receptor signaling pathway involved in ureteric bud formation | |||
GO:2000701 glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation | |||
</pre> | |||
'''February 22, 2010''' | |||
Added new terms for these SF items (more information in comments): | |||
*[https://sourceforge.net/tracker/?func=detail&atid=440764&aid=2905937&group_id=36855 Glomerular mesangium] | |||
*[https://sourceforge.net/tracker/?func=detail&atid=440764&aid=2907403&group_id=36855 Podocyte development/ differentiation] | |||
*[https://sourceforge.net/tracker/?func=detail&atid=440764&aid=2914952&group_id=36855 head kidney development] | |||
*[https://sourceforge.net/tracker/?func=detail&atid=440764&aid=2928268&group_id=36855 specification of renal capsule] | |||
*[https://sourceforge.net/tracker/?func=detail&atid=440764&aid=2926832&group_id=36855 metanephric + nephrogenic mesenchyme morphogenesis] | |||
*[https://sourceforge.net/tracker/?func=detail&atid=440764&aid=2916204&group_id=36855 mesenchymal cell proliferation involved in kidney] | |||
'''March 2010''' | |||
Metanephros specific terms | |||
GO:0072203 cell proliferation involved in metanephros development | |||
GO:0072204 cell-cell signaling involved in metanephros development | |||
GO:0072205 metanephric collecting duct development | |||
GO:0072206 metanephric juxtaglomerular apparatus development | |||
GO:0072207 metanephric epithelium development | |||
GO:0072208 metanephric smooth muscle tissue development | |||
GO:0072209 metanephric mesangial cell differentiation | |||
GO:0072210 metanephric nephron development | |||
GO:0072211 metanephric pyramids development | |||
GO:0072212 regulation of transcription from RNA polymerase II promoter involved in metanephros development | |||
GO:0072213 metanephric capsule development | |||
GO:0072214 metanephric cortex development | |||
GO:0072215 regulation of metanephros development | |||
GO:0072216 positive regulation of metanephros development | |||
GO:0072217 negative regulation of metanephros development | |||
GO:0072218 metanephric ascending thin limb development | |||
GO:0072219 metanephric cortical collecting duct development | |||
GO:0072220 metanephric descending thin limb development | |||
GO:0072221 metanephric distal convoluted tubule development | |||
GO:0072222 metanephric early distal convoluted tubule development | |||
GO:0072223 metanephric glomerular mesangium development | |||
GO:0072224 metanephric glomerulus development | |||
GO:0072225 metanephric late distal convoluted tubule development | |||
GO:0072226 metanephric long descending thin limb bend development | |||
GO:0072227 metanephric macula densa development | |||
GO:0072228 metanephric prebend segment development | |||
GO:0072229 metanephric proximal convoluted tubule development | |||
GO:0072230 metanephric proximal straight tubule development | |||
GO:0072231 metanephric S1 development | |||
GO:0072232 metanephric S2 development | |||
GO:0072233 metanephric thick ascending limb development | |||
GO:0072234 metanephric nephron tubule development | |||
GO:0072235 metanephric distal tubule development | |||
GO:0072236 metanephric loop of Henle development | |||
GO:0072237 metanephric proximal tubule development | |||
GO:0072238 metanephric long nephron development | |||
GO:0072239 metanephric glomerulus vasculature development | |||
GO:0072240 metanephric DCT cell differentiation | |||
GO:0072241 metanephric DCT cell development | |||
GO:0072242 metanephric DCT cell fate commitment | |||
GO:0072243 metanephric nephron epithelium development | |||
GO:0072244 metanephric glomerular epithelium development | |||
GO:0072245 metanephric glomerular parietal epithelial cell differentiation | |||
GO:0072246 metanephric glomerular parietal epithelial cell development | |||
GO:0072247 metanephric glomerular parietal epithelial cell fate commitment | |||
GO:0072248 metanephric glomerular visceral epithelial cell differentiation | |||
GO:0072249 metanephric glomerular visceral epithelial cell development | |||
GO:0072250 metanephric glomerular visceral epithelial cell fate commitment | |||
GO:0072251 metanephric juxtaglomerulus cell differentiation | |||
GO:0072252 metanephric juxtaglomerulus cell development | |||
GO:0072253 metanephric juxtaglomerulus cell fate commitment | |||
GO:0072254 metanephric glomerular mesangial cell differentiation | |||
GO:0072255 metanephric glomerular mesangial cell development | |||
GO:0072256 metanephric glomerular mesangial cell fate commitment | |||
GO:0072257 metanephric nephron tubule epithelial cell differentiation | |||
GO:0072258 metanephric interstitial cell differentiation | |||
GO:0072259 metanephric interstitial cell development | |||
GO:0072260 metanephric interstitial cell fate commitment | |||
GO:0072261 metanephric extraglomerular mesangial cell proliferation | |||
GO:0072262 metanephric glomerular mesangial cell proliferation | |||
GO:0072263 metanephric intraglomerular mesangial cell proliferation | |||
GO:0072264 metanephric glomerular endothelium development | |||
GO:0072265 metanephric capsule morphogenesis | |||
GO:0072266 metanephric capsule formation | |||
GO:0072267 metanephric capsule specification | |||
GO:0072268 pattern specification involved in metanephros development | |||
GO:0072269 metanephric long descending thin limb development | |||
GO:0072270 metanephric short nephron development | |||
GO:0072271 metanephric short descending thin limb development | |||
GO:0072272 proximal/distal pattern formation involved in metanephric nephron development | |||
GO:0072273 metanephric nephron morphogenesis | |||
GO:0072274 metanephric glomerular basement membrane development | |||
GO:0072275 metanephric glomerulus morphogenesis | |||
GO:0072276 metanephric glomerulus vasculature morphogenesis | |||
GO:0072277 metanephric glomerular capillary formation | |||
GO:0072278 metanephric comma-shaped body morphogenesis | |||
GO:0072279 convergent extension involved in metanephric nephron morphogenesis | |||
GO:0072280 establishment of planar polarity involved in metanephric nephron morphogenesis | |||
GO:0072281 mesenchymal stem cell differentiation involved in metanephric nephron morphogenesis | |||
GO:0072282 metanephric nephron tubule morphogenesis | |||
GO:0072283 metanephric renal vesicle morphogenesis | |||
GO:0072284 metanephric S-shaped body morphogenesis | |||
GO:0072285 mesenchymal to epithelial transition involved in metanephric renal vesicle formation | |||
GO:0072286 metanephric connecting tubule development | |||
GO:0072287 metanephric distal tubule morphogenesis | |||
GO:0072288 metanephric proximal tubule morphogenesis | |||
GO:0072289 metanephric nephron tubule formation | |||
GO:0072290 epithelial cell migration involved in metanephric nephron tubule morphogenesis | |||
GO:0072291 epithelial cell migration involved in metanephric distal tubule morphogenesis | |||
GO:0072292 epithelial cell migration involved in metanephric proximal tubule morphogenesis | |||
GO:0072293 specification of metanephric nephron tubule identity | |||
GO:0072294 specification of metanephric connecting tubule identity | |||
GO:0072295 specification of metanephric distal tubule identity | |||
GO:0072296 specification of metanephric loop of Henle identity | |||
GO:0072297 specification of metanephric proximal tubule identity | |||
GO:0072298 regulation of metanephric glomerulus development | |||
GO:0072299 negative regulation of metanephric glomerulus development | |||
GO:0072300 positive regulation of metanephric glomerulus development | |||
GO:0072301 regulation of metanephric glomerular mesangial cell proliferation | |||
GO:0072302 negative regulation of metanephric glomerular mesangial cell proliferation | |||
GO:0072303 positive regulation of glomerular metanephric mesangial cell proliferation | |||
GO:0072304 regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis | |||
GO:0072305 negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis | |||
GO:0072306 positive regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis | |||
GO:0072307 regulation of metanephric nephron tubule epithelial cell differentiation | |||
GO:0072308 negative regulation of metanephric nephron tubule epithelial cell differentiation | |||
GO:0072309 mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis | |||
GO:0072310 glomerular epithelial cell development | |||
GO:0072311 glomerular epithelial cell differentiation | |||
GO:0072312 metanephric glomerular epithelial cell differentiation | |||
GO:0072313 metanephric glomerular epithelial cell development | |||
GO:0072314 glomerular epithelial cell fate commitment | |||
GO:0072315 metanephric glomerular epithelial cell fate commitment | |||
GO:0072185 metanephric cap development | |||
GO:0072186 metanephric cap morphogenesis | |||
GO:0072187 metanephric cap formation | |||
GO:0072188 metanephric cap specification | |||
GO:0072203 cell proliferation involved in metanephros development | |||
GO:0072204 cell-cell signaling involved in metanephros development | |||
GO:0072170 metanephric tubule development | |||
GO:0072171 mesonephric tubule morphogenesis | |||
GO:0072172 mesonephric tubule formation | |||
GO:0072173 metanephric tubule morphogenesis | |||
GO:0072174 metanephric tubule formation | |||
GO:0072162 metanephric mesenchymal cell differentiation | |||
GO:0072136 metanephric mesenchymal cell proliferation | |||
GO:0072133 metanephric mesenchyme morphogenesis | |||
GO:0072108 positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis | |||
GO:0072075 metanephric mesenchyme development | |||
GO:0035788 cell migration involved in metanephros development | |||
GO:0035789 metanephric mesenchymal cell migration | |||
GO:2000591 positive regulation of metanephric mesenchymal cell migration | |||
GO:0035793 positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway | |||
GO:2000004 regulation of metanephric S-shaped body morphogenesis | |||
GO:2000005 negative regulation of metanephric S-shaped body morphogenesis | |||
GO:2000006 regulation of metanephric comma-shaped body morphogenesis | |||
GO:2000007 negative regulation of metanephric comma-shaped body morphogenesis | |||
</pre> | |||
'''August 2010''' | |||
Mesonephros specific terms | |||
GO:0072163 mesonephric epithelium development | |||
GO:0072164 mesonephric tubule development | |||
GO:0072165 anterior mesonephric tubule development | |||
GO:0072166 posterior mesonephric tubule development | |||
GO:0072167 specification of mesonephric tubule identity | |||
GO:0072168 specification of anterior mesonephric tubule identity | |||
GO:0072169 specification of posterior mesonephric tubule identity | |||
GO:0072171 mesonephric tubule morphogenesis | |||
GO:0072172 mesonephric tubule formation | |||
GO:0072177 mesonephric duct development | |||
GO:0072180 mesonephric duct morphogenesis | |||
GO:0072181 mesonephric duct formation | |||
GO:0061206 mesonephros morphogenesis | |||
GO:0061207 mesonephric juxtaglomerulus cell differentiation | |||
GO:0061208 cell differentiation involved in mesonephros development | |||
GO:0061209 cell proliferation involved in mesonephros development | |||
GO:0061210 cell-cell signaling involved in mesonephros development | |||
GO:0061211 mesonephric collecting duct development | |||
GO:0061212 mesonephric juxtaglomerular apparatus development | |||
GO:0061213 positive regulation of mesonephros development | |||
GO:0061214 mesonephric smooth muscle tissue development | |||
GO:0061215 mesonephric nephron development | |||
GO:0061216 regulation of transcription from RNA polymerase II promoter involved in mesonephros development | |||
GO:0061217 regulation of mesonephros development | |||
GO:0061218 negative regulation of mesonephros development | |||
GO:0061219 mesonephric mesenchyme development | |||
GO:0061220 mesonephric macula densa development | |||
GO:0061221 mesonephric mesenchyme morphogenesis | |||
GO:0061222 mesonephric mesenchymal cell proliferation | |||
GO:0061223 mesonephric mesenchymal cell differentiation | |||
GO:0061224 mesonephric glomerulus development | |||
GO:0061225 mesonephric extraglomerular mesangial cell proliferation | |||
GO:0061226 proximal/distal pattern specification involved in mesonephric nephron development | |||
GO:0061227 pattern specification involved in mesonephros development | |||
GO:0061228 mesonephric nephron morphogenesis | |||
GO:0061229 mesonephric juxtaglomerulus cell development | |||
GO:0061230 mesonephric juxtaglomerulus cell fate commitment | |||
GO:0061231 mesonephric glomerulus vasculature development | |||
GO:0061232 mesonephric glomerular epithelium development | |||
GO:0061233 mesonephric glomerular basement membrane development | |||
GO:0061234 mesonephric glomerulus morphogenesis | |||
GO:0061235 mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis | |||
GO:0061236 mesonephric comma-shaped body morphogenesis | |||
GO:0061237 convergent extension involved in mesonephric nephron morphogenesis | |||
GO:0061238 establishment of planar polarity involved in mesonephric nephron morphogenesis | |||
GO:0061239 mesenchymal stem cell differentiation involved in mesonephric nephron morphogenesis | |||
GO:0061240 mesonephric nephron tubule morphogenesis | |||
GO:0061241 nephron epithelium development | |||
GO:0061242 mesonephric nephron tubule development | |||
GO:0061243 mesonephric renal vesicle morphogenesis | |||
GO:0061244 mesonephric S-shaped body morphogenesis | |||
GO:0061247 mesonephric glomerular mesangium development | |||
GO:0061248 mesonephric glomerulus vasculature morphogenesis | |||
GO:0061249 mesonephric glomerular capillary formation | |||
GO:0061250 mesonephric glomerular epithelial cell differentiation | |||
GO:0061251 mesonephric glomerular epithelial cell development | |||
GO:0061252 mesonephric glomerular epithelial cell fate commitment | |||
GO:0061253 mesonephric glomerular parietal epithelial cell differentiation | |||
GO:0061254 mesonephric glomerular parietal epithelial cell development | |||
GO:0061255 mesonephric glomerular parietal epithelial cell fate commitment | |||
GO:0061256 mesonephric glomerular visceral epithelial cell differentiation | |||
GO:0061257 mesonephric glomerular visceral epithelial cell development | |||
GO:0061258 mesonephric glomerular visceral epithelial cell fate commitment | |||
GO:0061259 mesonephric glomerular mesangial cell differentiation | |||
GO:0061260 mesonephric mesangial cell differentiation | |||
GO:0061261 mesenchymal to epithelial transition involved in mesonephros morphogenesis | |||
GO:0061262 mesonephric renal vesicle formation | |||
GO:0061263 mesonephric glomerular mesangial cell development | |||
GO:0061264 mesonephric glomerular mesangial cell fate commitment | |||
GO:0061265 mesonephric nephron tubule epithelial cell differentiation | |||
GO:0061266 mesonephric interstitial cell differentiation | |||
GO:0061267 mesonephric interstitial cell development | |||
GO:0061268 mesonephric interstitial cell fate commitment | |||
GO:0061269 mesonephric glomerular mesangial cell proliferation | |||
GO:0061270 mesonephric intraglomerular mesangial cell proliferation | |||
GO:0061271 mesenchymal to epithelial transition involved in mesonephric renal vesicle formation | |||
GO:0061272 mesonephric connecting tubule development | |||
GO:0061273 mesonephric distal tubule morphogenesis | |||
GO:0061274 mesonephric distal tubule development | |||
GO:0061275 mesonephric proximal tubule development | |||
GO:0061276 mesonephric proximal tubule morphogenesis | |||
GO:0061277 mesonephric nephron tubule formation | |||
GO:0061278 epithelial cell migration involved in mesonephric nephron tubule morphogenesis | |||
GO:0061279 epithelial cell migration involved in mesonephric distal tubule morphogenesis | |||
GO:0061280 epithelial cell migration involved in mesonephric proximal tubule morphogenesis | |||
GO:0061281 specification of mesonephric connecting tubule identity | |||
GO:0061282 specification of mesonephric nephron tubule identity | |||
GO:0061283 specification of mesonephric distal tubule identity | |||
GO:0061284 specification of mesonephric proximal tubule identity | |||
GO:0061285 mesonephric capsule development | |||
GO:0061286 mesonephric capsule morphogenesis | |||
GO:0061287 mesonephric capsule formation | |||
GO:0061288 mesonephric capsule specification | |||
GO:0061289 Wnt receptor signaling pathway involved in kidney development | |||
GO:0061290 canonical Wnt receptor signaling pathway involved in metanephric kidney development | |||
GO:0061291 canonical Wnt receptor signaling pathway involved in ureteric bud branching | |||
GO:0061292 canonical Wnt receptor signaling pathway involved in mesonephros development | |||
GO:0061293 canonical Wnt receptor signaling pathway involved in mesonephric nephron development | |||
GO:0061294 mesonephric renal vesicle induction | |||
GO:0061295 regulation of mesenchymal stem cell apoptosis involved in mesonephric nephron morphogenesis | |||
GO:0061296 negative regulation of mesenchymal stem cell apoptosis involved in mesonephric nephron morphogenesis | |||
GO:0061297 positive regulation of mesenchymal stem cell apoptosis involved in mesonephric nephron morphogenesis | |||
</pre> | |||
'''September 2010''' | |||
Pronephros specific terms | |||
GO:0039003 pronephric field specification | |||
GO:0039004 specification of pronephric proximal tubule identity | |||
GO:0039005 specification of pronephric tubule identity | |||
GO:0039006 pronephric nephron tubule formation | |||
GO:0039007 pronephric nephron morphogenesis | |||
GO:0039008 pronephric nephron tubule morphogenesis | |||
GO:0039009 rectal diverticulum development | |||
GO:0039010 specification of pronephric distal tubule identity | |||
GO:0039011 pronephric proximal tubule morphogenesis | |||
GO:0039012 pronephric sinus development | |||
GO:0039013 pronephric distal tubule morphogenesis | |||
GO:0039014 cell differentiation involved in pronephros development | |||
GO:0039015 cell proliferation involved in pronephros development | |||
GO:0039016 cell-cell signaling involved in pronephros development | |||
GO:0039017 pattern specification involved in pronephros development | |||
GO:0039018 nephrostome development | |||
GO:0039019 pronephric nephron development | |||
GO:0039020 pronephric nephron tubule development | |||
GO:0039021 pronephric glomerulus development | |||
GO:0039022 pronephric duct development | |||
GO:0039023 pronephric duct morphogenesis | |||
GO:0072114 pronephros morphogenesis | |||
GO:0072116 pronephros formation | |||
GO:0072120 pronephros maturation | |||
GO:0035775 pronephric glomerulus morphogenesis | |||
GO:0035776 pronephric proximal tubule development | |||
GO:0035777 pronephric distal tubule development | |||
GO:0035778 pronephric nephron tubule epithelial cell differentiation | |||
GO:0035779 angioblast cell differentiation | |||
</pre> | |||
'''November 2010''' | |||
Insect renal system specific terms | |||
GO:0061318 renal filtration cell differentiation | |||
GO:0061319 nephrocyte differentiation | |||
GO:0061320 pericardial nephrocyte differentiation | |||
GO:0061321 garland nephrocyte differentiation | |||
GO:0061322 disseminated nephrocyte differentiation | |||
GO:0061326 renal tubule development | |||
GO:0061327 anterior Malpighian tubule development | |||
GO:0061328 posterior Malpighian tubule development | |||
GO:0061329 Malpighian tubule principle cell differentiation | |||
GO:0061330 Malpighian tubule stellate cell differentiation | |||
GO:0061331 cell proliferation involved in Malpighian tubule morphogenesis | |||
GO:0061332 Malpighian tubule bud morphogenesis | |||
GO:0061333 renal tubule morphogenesis | |||
GO:0061334 cell migration involved in Malpighian tubule morphogenesis | |||
GO:0061335 cell growth involved in Malpighian tubule morphogenesis | |||
GO:0061336 cell morphogenesis involved in Malpighian tubule morphogenesis | |||
GO:0061352 cell chemotaxis involved in Malpighian tubule morphogenesis | |||
GO:0061353 BMP signaling pathway involved in Malpighian tubule cell chemotaxis | |||
GO:0061382 Malpighian tubule tip cell differentiation |
Latest revision as of 11:53, 16 April 2019
Please suggest agenda items, relevant papers and other information relating to kidney development GO terms that you would like discussed at this workshop, to enable us to form an agenda.
Participants
GO annotators | GO Editors | Kidney Development Experts |
---|---|---|
Dr Yasmin Alam-Faruque (GOA/EBI) Dr Emily Dimmer (GOA/EBI) Dr Rachael Huntley (GOA/EBI) Dr Rebecca Foulger (UniProt/Xenopus/EBI) Dr Susan Tweedie (Flybase/EBI) Dr Doug Howe (ZFIN/USA) (via Skype) |
Dr David Hill (Jax/USA) Dr Midori Harris (EBI) Dr Jane Lomax (EBI) |
Professor Adrian Woolf (ICH) Dr Duncan Davidson (GUDMAP) Professor Randall Thomas (IBISC CNRS) Professor Jamie Davies (GUDMAP) (available pm via phone/email if needed) Dr Bernard de Bono (Virtual Physiological Human, EBI) |
Location
EMBL-EBI, Room C202/203 - shared facilities, The Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD. Date: Monday 25th January 2010, 9:30am to 5pm
- Travel instructions to the EBI, The Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD [1]
- Further information about the on-site accommodation [2]
Programme
9:15am | Tea/ Coffee and Cookies | |
9:30am | Welcome and introduction | Yasmin |
9:35am | Introduction to GO | David Hill |
9:45am | Kidney precursor cells and tissues (segmentation) * Development of kidney field * Nephrogenic stem cell differentiation. * Sensing a quorum of cells / control of the number of cells in a cell group * (Mesonephric/metanephric) mesenchyme-epithelial transition * Formation of tight junctions/ adherens junctions/ basement membrane, * formation of pronephric-, mesonephric-, metanephric-specific terms? * SF 2859892: specification of kidney anlage *PMID 18715948 * SF 2860000: proximodistal kidney segmentation *PMID 17875669 *PMID 18715948 *PMID 12925600 * SF 2916204: mesenchymal cell differentiation involved in kidney development *PMID 12399320 and SF 2929915 mesenchymal cell differentiation involved in urinary tract development *PMID 17442697 * SF 2926832: metanephric + nephrogenic mesenchyme morphogenesis PMID 15342483 |
|
11am | Coffee break | |
11:20am | Kidney morphogenesis - Kidney structure formation * Cell morphogenesis * Formation of renal vesicle, * Formation of comma-shaped body/ S-shaped body/ glomerulus * Formation of mesangium, * Macula densa formation/ development * Oriented mitosis * SF 2860000: proximodistal kidney segmentation *PMID 17875669 *PMID 18715948 *PMID 12925600 * SF 2903833: kidney glomus development *PMID 10572058 * SF 2905937: Glomerular mesangium PMID 8910451 and PMID 10077614 * SF 2928268: specification of renal capsule PMID 15634693 |
|
12:30pm | Lunch @ on-site campus restaurant | |
1:30pm | Anatomical structure development/ formation * Epithelial patterning of the nephron epithelium: proximal/distal nephron tubule patterning/ specification/ identity/ development * Regulation of epithelial tubule diameter (is_a GO:0035296 regulation of tube diameter) * Morphogenesis of epithelial tubules * mesonephric tubule (anterior and posterior in mouse) * new children of GO:0002070 epithelial cell maturation: podocyte/ proximal tubule/ loop of Henle/ distal tubule/ connecting tubule cell differentiation (and other nephron cell types) * nephric duct/ tubule specification/ differentiation/ morphogenesis * Collecting duct system development/ formation/ differentiation * Connection of nephron tubule to collecting duct * Connecting tubule development; * SF 2902547: various kidney development terms *PMID 16790474 *PMID 18835385 * SF 2860000: proximodistal kidney segmentation *PMID 17875669 *PMID 18715948 *PMID 12925600 * SF 2907403 Podocyte development/ differentiation PMID 19050011 |
|
3pm | Coffee break | |
3:20pm | Continue with Anatomical structure development/ formation * kidney proximal tubule development/ specification; proximal convoluted tubule; * kidney intermediate tubule development/ identity/ specification:- thin descending limb; thin ascending limb; thick ascending limb; * kidney distal tubule development/ specification; distal convoluted tubule * Signalling to blood vessel-forming cells/ renal vasculature development (GO:0060684 epithelial-mesenchymal cell signaling?) * renal smooth muscle cell differentiation * SF 2902547: various kidney development terms *PMID 16790474 *PMID 18835385 * SF 2860000: proximodistal kidney segmentation *PMID 17875669 *PMID 18715948 *PMID 12925600 * SF 2903833: kidney glomus development *PMID 10572058 * SF 2929817 Ureter development *PMID 17442697 * SF 2930545 Glomerular capillary formation *PMID 18272846 |
|
5pm | Close |
KDM Minutes
Current Kidney Development Ontology Terms
The currently available kidney development process ontology (November 2009)
[[3]]
GO:0001656 GO:0001657 GO:0001658 GO:0001822 GO:0001823 GO:0032835 GO:0032836 GO:0034671 GO:0034672 GO:0048793 GO:0060675 GO:0060676 GO:0060677 GO:0060678 GO:0060679 GO:0060680 GO:0060681 GO:0060682
- chart [4]
Relevant papers and other resources
- Kidney Development Review Papers:
- Mammalian reviews:
- PMID 19906853 Advances in early kidney specification, development and patterning. Dressler M 2009. Talks about the essential roles of intrinsic nuclear factors and secreted signaling molecules in specifying renal epithelial stem cells and their self-renewal, in driving the complex dynamics of epithelial cell branching morphogenesis, and in nephron patterning.
- PMID 15554941 Transcriptional control of kidney development. Bouchard M. 2004. Talks about genes involved in nephric lineage specification (Pax2/Pax8/Lim1/Bmp4/Wt1/GDNF1/Eya1/Foxc1); metanephros development - UB positioning, induction, nephron induction, ureter branching, Stromal cell differentiation(Gdnf1/Eya1/Foxc1/2/Slit2/Robo2/Bmp4/Pax2/Hox11(HoxA11/C11/D11)/ Sall1/Wt1/Six1/Wnt4/Emx2/Gata3/BF2/Pod1/Pbx21.
- PMID 15380247 Recent genetic studies of mouse kidney development. Yu J, McMahon AP, Valerius MT. 2004. Has a nice diagram of the stages of nephron formation on p.551. Also lists genes investigated with particular molecular regulation of outgrowth of the uteric bud and regulation of tubulogenesis (Table 1; p552 - Gdf1, Six1, Slit2/Robo2, Wnt1, Fras1+Grip1, Pod1, Pbx1, Brn1, Psen1/2).
- PMID 16760375 Role of transcriptional networks in coordinating early events during kidney development. Boyle S, de Caestecker Mark. 2006. Has nice diagrams of stages of early mammalian kidney development. Reviews transcription factors in mesenephric mesenchyme: Eya1/ Foxc1/2/ Hoxa/c/d11/ Pax2/ Pbx1/ Rar-alpha/beta2/ Sall1/ Six1/ Wt1.
- PMID 12094231 Coordinating early kidney development: lessons from gene targeting. Vainio S, Lin Y. 2002. Nice diagrams of kidney development. List of genes essential for early kidney development (Transcription Factors: Emx2/Eya1/Foxc1/Foxd1/Pax2/Rara,Rarb/Sall1/Wt1; Growth factors: Bmp4/Bmp7/Fgf7/Gdnf/Wnt4; Growth factors/receptors: Gfra1/Notch2/Ret; Proteoglycans and their biosynthetic enzymes: Hs2st/Gpc3).
- Mammalian reviews:
- Other resources:
Notes
- Added KDM acronym to any NTR via SF relating to kidney development
- All KDM requests currently in SF [12]
- Related terms recently requested:
- SF 2932119 -ive regn of GO:0060681 PMID 17118062
- SF 2929886 BMP signaling involved in urinary tract segmentation PMID 17442697
- SF 2929817 ureter development/differentiation/morphogenesis PMID 17442697
- SF 2928381 ureteric peristalsis PMID 18776146
- Recently committed NTR nephrogenesis-related GO terms
- (SF 2884040 metanephric mesenchyme to epithelial transition terms *PMID 15843474) (November 2009).
- (SF 2907000 *PMID 10021330) Addition of 'Nephrogenesis' as a 'related' synonym of 'Kidney Development'. BMP4 (human) Induction of nephrogenesis: NTR: "nephric duct morphogenesis" and NTR "positive regulation of kidney development".(December 2009)
- (SF 2914121 +ive and -ive regulation of branching involved in ureteric bud morphogenesis and +ive and -ive regulation of glomerulus development PMID 12141440) (December 2009)
- SF 2930642 cellular response to dexamethasone stimulus PMID 17537984 (January 2010)
- GO:0060677 ureteric bud elongation (Def: The process by which the ureteric bud grows along its axis) - does this term cover ureteric bud invasion? (the initial key step of metanephros devpt, the ureteric bud invades the mesenchyme and induces epithelialization and differentiation of the mesenchyme into the glomeruli, the Loop of Henle and the proximal and distal tubules - see PMID 18470945|PMID 11688560). If so, need to improve definition.
- Keep an eye on definition compatability across species/taxa
Ontology Editing
Midori Harris and David Hill are working through terms added during the meeting and the SF items. The first changes from the meeting were committed to the live GO on February 8, 2010, in gene_ontology_write.obo revision 1.1010.
The changes committed are summarized below and in the CVS log, and shown in detail in two diff files, one generated by the obodiff utility and the other by the UNIX diff utility.
February 8, 2010
2010-02-08 confirmed definition of 'kidney development' GO:0001822; adjusted parentage definition adjustments: GO:0001759 induction of an organ GO:0061005 cell differentiation involved in kidney development added synonyms: GO:0061004 pattern specification involved in kidney development new terms: GO:0090183 regulation of kidney development GO:0090184 positive regulation of kidney development GO:0090185 negative regulation of kidney development GO:0090189 regulation of branching involved in ureteric bud morphogenesis GO:0090190 positive regulation of branching involved in ureteric bud morphogenesis GO:0090191 negative regulation of branching involved in ureteric bud morphogenesis GO:0090192 regulation of glomerulus development GO:0090193 positive regulation of glomerulus development GO:0090194 negative regulation of glomerulus development GO:0061149 BMP signaling pathway involved in ureter morphogenesis GO:0061151 BMP signaling pathway involved in renal system segmentation GO:0061150 renal system segmentation GO:0003338 metanephros morphogenesis GO:0003337 mesenchymal to epithelial transition involved in metanephros morphogenesis GO:0003339 regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis GO:0003340 negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis GO:0090094 metanephric cap mesenchymal cell proliferation GO:0090095 regulation of metanephric cap mesenchymal cell proliferation GO:0090096 positive regulation of metanephric cap mesenchymal cell proliferation GO:2000729 positive regulation of mesenchymal cell proliferation involved in ureter development GO:0071893 BMP signaling pathway involved in nephric duct formation GO:0035787 cell migration involved in kidney development GO:0035788 cell migration involved in metanephros development GO:0035789 metanephric mesenchymal cell migration GO:0035790 platelet-derived growth factor receptor-alpha signaling pathway GO:0035791 platelet-derived growth factor receptor-beta signaling pathway GO:2000584 negative regulation of platelet-derived growth factor receptor-alpha signaling pathway GO:2000591 positive regulation of metanephric mesenchymal cell migration GO:0035793 positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway GO:2000703 negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation GO:2000704 positive regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation GO:2000702 regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation GO:2001012 mesenchymal cell differentiation involved in renal system development GO:0061437 renal system vasculature development ; GO:0061438 renal system vasculature morphogenesis ; GO:0061439 kidney vasculature morphogenesis ; GO:0061440 kidney vasculature development ; GO:0061441 renal artery morphogenesis ; GO:0036056 filtration diaphragm ; GO:0036057 slit diaphragm ; GO:0036058 filtration diaphragm assembly ; GO:0036059 nephrocyte diaphragm assembly ; GO:0036060 slit diaphragm assembly ; GO:0072001 renal system development GO:0072002 Malpighian tubule development GO:0072003 kidney rudiment formation GO:0072004 kidney field specification GO:0072005 maintenance of kidney identity GO:0072006 nephron development GO:0072007 mesangial cell differentiation GO:0072008 glomerular mesangial cell differentiation GO:0072009 nephron epithelium development GO:0072010 glomerular epithelium development GO:0072011 glomerular endothelium development GO:0072012 glomerulus vasculature development GO:0072013 glomus development GO:0072014 proximal tubule development GO:0072015 glomerular visceral epithelial cell development GO:0072016 glomerular parietal epithelial cell development GO:0072017 distal tubule development GO:0072018 intermediate tubule development GO:0072019 proximal convoluted tubule development GO:0072020 proximal straight tubule development GO:0072021 ascending thin limb development GO:0072022 descending thin limb development GO:0072023 thick ascending limb development GO:0072024 macula densa development GO:0072025 distal convoluted tubule development GO:0072026 distal straight tubule development GO:0072027 connecting tubule development GO:0072028 nephron morphogenesis GO:0072029 long nephron development GO:0072030 short nephron development GO:0072031 S1 development GO:0072032 S2 development GO:0072033 renal vesicle formation GO:0072034 positive regulation of renal vesicle formation GO:0072035 pre-tubular aggregate formation GO:0072036 mesenchymal to epithelial transition involved in renal vesicle formation GO:0072037 mesenchymal stem cell differentiation involved in nephron morphogenesis GO:0072038 mesenchymal stem cell maintenance involved in nephron morphogenesis GO:0072039 regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis GO:0072040 negative regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis GO:0072041 positive regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis GO:0072042 regulation of mesenchymal stem cell proliferation involved in nephron morphogenesis GO:0072043 regulation of pre-tubular aggregate formation by cell-cell signaling GO:0072044 collecting duct development GO:0072045 convergent extension involved in nephron morphogenesis GO:0072046 establishment of planar polarity involved in nephron morphogenesis GO:0072047 proximal/distal pattern formation involved in nephron development GO:0072048 renal system pattern specification GO:0072049 comma-shaped body morphogenesis GO:0072050 S-shaped body morphogenesis GO:0072051 juxtaglomerular apparatus development GO:0072052 juxtaglomerulus cell differentiation GO:0072053 renal inner medulla development GO:0072054 renal outer medulla development GO:0072055 renal cortex development GO:0072056 pyramids development GO:0072057 inner stripe development GO:0072058 outer stripe development GO:0072059 cortical collecting duct development GO:0072060 outer medullary collecting duct development GO:0072061 inner medullary collecting duct development GO:0072062 S1 cell differentiation GO:0072063 short descending thin limb development GO:0072064 long descending thin limb development GO:0072065 long descending thin limb bend development GO:0072066 prebend segment development GO:0072067 early distal convoluted tubule development GO:0072068 late distal convoluted tubule development GO:0072069 DCT cell differentiation GO:0072070 loop of Henle development GO:0072071 interstitial cell differentiation GO:0072072 kidney stroma development GO:0072073 kidney epithelium development GO:0072074 kidney mesenchyme development GO:0072075 metanephric mesenchyme development GO:0072076 nephrogenic mesenchyme development GO:0072077 renal vesicle morphogenesis GO:0072078 nephron tubule morphogenesis GO:0072079 nephron tubule formation GO:0072080 nephron tubule development GO:0072081 specification of nephron tubule identity GO:0072082 specification of proximal tubule identity GO:0072083 specification of intermediate tubule identity GO:0072084 specification of distal tubule identity GO:0072085 specification of connecting tubule identity GO:0072086 specification of loop of Henle identity GO:0072087 renal vesicle development GO:0072088 nephron epithelium morphogenesis GO:0072089 stem cell proliferation GO:0072090 mesenchymal stem cell proliferation involved in nephron morphogenesis GO:0072091 regulation of stem cell proliferation GO:0072092 ureteric bud invasion GO:0072093 metanephric renal vesicle formation GO:0072094 positive regulation of metanephric renal vesicle formation GO:0072095 regulation of branch elongation involved in ureteric bud branching GO:0072096 negative regulation of branch elongation involved in ureteric bud branching GO:0072097 negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathway GO:0072098 anterior/posterior pattern specification involved in kidney development GO:0072099 ureteric bud anterior/posterior pattern specification GO:0072100 specification of ureteric bud anterior/posterior symmetry GO:0072101 specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway GO:0072102 glomerulus morphogenesis GO:0072103 glomerulus vasculature morphogenesis GO:0072104 glomerular capillary formation GO:0072105 ureteric peristalsis GO:0072106 regulation of ureteric bud formation GO:0072107 positive regulation of ureteric bud formation GO:0072108 positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis GO:0072109 glomerular mesangium development GO:0072110 glomerular mesangial cell proliferation GO:0072111 cell proliferation involved in kidney development GO:0072112 glomerular visceral epithelial cell differentiation GO:0072113 head kidney development GO:0072114 pronephros morphogenesis GO:0072115 head kidney morphogenesis GO:0072116 pronephros formation GO:0072117 head kidney formation GO:0072118 pronephros structural organization GO:0072119 head kidney structural organization GO:0072120 pronephros maturation GO:0072121 head kidney maturation GO:0072122 extraglomerular mesangial cell proliferation GO:0072123 intraglomerular mesangial cell proliferation GO:0072124 regulation of glomerular mesangial cell proliferation GO:0072125 negative regulation of glomerular mesangial cell proliferation GO:0072126 positive regulation of glomerular mesangial cell proliferation GO:0072127 renal capsule development GO:0072128 renal capsule morphogenesis GO:0072129 renal capsule formation GO:0072130 renal capsule specification GO:0072131 kidney mesenchyme morphogenesis GO:0072132 mesenchyme morphogenesis GO:0072133 metanephric mesenchyme morphogenesis GO:0072134 nephrogenic mesenchyme morphogenesis GO:0072135 kidney mesenchymal cell proliferation GO:0072136 metanephric mesenchymal cell proliferation GO:0072137 condensed mesenchymal cell proliferation GO:0072138 mesenchymal cell proliferation involved in ureteric bud development GO:0072139 glomerular parietal epithelial cell differentiation GO:0072140 DCT cell development GO:0072141 renal interstitial cell development GO:0072142 juxtaglomerulus cell development GO:0072143 mesangial cell development GO:0072144 glomerular mesangial cell development GO:0072145 S1 cell development GO:0072146 DCT cell fate commitment GO:0072147 glomerular parietal epithelial cell fate commitment GO:0072148 epithelial cell fate commitment GO:0072149 glomerular visceral epithelial cell fate commitment GO:0072150 juxtaglomerulus cell fate commitment GO:0072151 mesangial cell fate commitment GO:0072152 glomerular mesangial cell fate commitment GO:0072153 renal interstitial cell fate commitment GO:0072154 S1 cell fate commitment GO:0072155 epithelial cell migration involved in nephron tubule morphogenesis GO:0072156 distal tubule morphogenesis GO:0072157 epithelial cell migration involved in distal tubule morphogenesis GO:0072158 proximal tubule morphogenesis GO:0072159 epithelial cell migration involved in proximal tubule morphogenesis GO:0072160 nephron tubule epithelial cell differentiation GO:0072161 mesenchymal cell differentiation involved in kidney development GO:0072162 metanephric mesenchymal cell differentiation GO:0072163 mesonephric epithelium development GO:0072164 mesonephric tubule development GO:0072165 anterior mesonephric tubule development GO:0072166 posterior mesonephric tubule development GO:0072167 specification of mesonephric tubule identity GO:0072168 specification of anterior mesonephric tubule identity GO:0072169 specification of posterior mesonephric tubule identity GO:0072170 metanephric tubule development GO:0072171 mesonephric tubule morphogenesis GO:0072172 mesonephric tubule formation GO:0072173 metanephric tubule morphogenesis GO:0072174 metanephric tubule formation GO:0072175 epithelial tube formation GO:0072176 nephric duct development GO:0072177 mesonephric duct development GO:0072178 nephric duct morphogenesis GO:0072179 nephric duct formation GO:0072180 mesonephric duct morphogenesis GO:0072181 mesonephric duct formation GO:0072182 regulation of nephron tubule epithelial cell differentiation GO:0072183 negative regulation of nephron tubule epithelial cell differentiation GO:0072184 renal vesicle progenitor cell differentiation GO:0072185 metanephric cap development GO:0072186 metanephric cap morphogenesis GO:0072187 metanephric cap formation GO:0072188 metanephric cap specification GO:0072189 ureter development GO:0072190 ureter urothelium development GO:0072191 ureter smooth muscle development GO:0072192 ureter epithelial cell differentiation GO:0072193 ureter smooth muscle cell differentiation GO:0072194 kidney smooth muscle tissue development GO:0072195 kidney smooth muscle cell differentiation GO:0072196 pronephros proximal/distal pattern formation GO:0072197 ureter morphogenesis GO:0072198 mesenchymal cell proliferation involved in ureter development GO:0072199 regulation of mesenchymal cell proliferation involved in ureter development GO:0072200 negative regulation of mesenchymal cell proliferation involved in ureter development GO:0072201 negative regulation of mesenchymal cell proliferation GO:0072202 cell differentiation involved in metanephros development GO:0035787 cell migration involved in kidney development GO:2000061 regulation of ureter smooth muscle cell differentiation GO:2000062 negative regulation of ureter smooth muscle cell differentiation GO:2000063 positive regulation of ureter smooth muscle cell differentiation GO:0035799 ureter maturation GO:0035849 nephric duct elongation GO:0035850 epithelial cell differentiation involved in kidney development GO:2000696 regulation of epithelial cell differentiation involved in kidney development GO:2000697 negative regulation of epithelial cell differentiation involved in kidney development GO:2000698 positive regulation of epithelial cell differentiation involved in kidney development GO:2000699 fibroblast growth factor receptor signaling pathway involved in ureteric bud formation GO:2000701 glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation
February 22, 2010
Added new terms for these SF items (more information in comments):
- Glomerular mesangium
- Podocyte development/ differentiation
- head kidney development
- specification of renal capsule
- metanephric + nephrogenic mesenchyme morphogenesis
- mesenchymal cell proliferation involved in kidney
March 2010
Metanephros specific terms
GO:0072203 cell proliferation involved in metanephros development GO:0072204 cell-cell signaling involved in metanephros development GO:0072205 metanephric collecting duct development GO:0072206 metanephric juxtaglomerular apparatus development GO:0072207 metanephric epithelium development GO:0072208 metanephric smooth muscle tissue development GO:0072209 metanephric mesangial cell differentiation GO:0072210 metanephric nephron development GO:0072211 metanephric pyramids development GO:0072212 regulation of transcription from RNA polymerase II promoter involved in metanephros development GO:0072213 metanephric capsule development GO:0072214 metanephric cortex development GO:0072215 regulation of metanephros development GO:0072216 positive regulation of metanephros development GO:0072217 negative regulation of metanephros development GO:0072218 metanephric ascending thin limb development GO:0072219 metanephric cortical collecting duct development GO:0072220 metanephric descending thin limb development GO:0072221 metanephric distal convoluted tubule development GO:0072222 metanephric early distal convoluted tubule development GO:0072223 metanephric glomerular mesangium development GO:0072224 metanephric glomerulus development GO:0072225 metanephric late distal convoluted tubule development GO:0072226 metanephric long descending thin limb bend development GO:0072227 metanephric macula densa development GO:0072228 metanephric prebend segment development GO:0072229 metanephric proximal convoluted tubule development GO:0072230 metanephric proximal straight tubule development GO:0072231 metanephric S1 development GO:0072232 metanephric S2 development GO:0072233 metanephric thick ascending limb development GO:0072234 metanephric nephron tubule development GO:0072235 metanephric distal tubule development GO:0072236 metanephric loop of Henle development GO:0072237 metanephric proximal tubule development GO:0072238 metanephric long nephron development GO:0072239 metanephric glomerulus vasculature development GO:0072240 metanephric DCT cell differentiation GO:0072241 metanephric DCT cell development GO:0072242 metanephric DCT cell fate commitment GO:0072243 metanephric nephron epithelium development GO:0072244 metanephric glomerular epithelium development GO:0072245 metanephric glomerular parietal epithelial cell differentiation GO:0072246 metanephric glomerular parietal epithelial cell development GO:0072247 metanephric glomerular parietal epithelial cell fate commitment GO:0072248 metanephric glomerular visceral epithelial cell differentiation GO:0072249 metanephric glomerular visceral epithelial cell development GO:0072250 metanephric glomerular visceral epithelial cell fate commitment GO:0072251 metanephric juxtaglomerulus cell differentiation GO:0072252 metanephric juxtaglomerulus cell development GO:0072253 metanephric juxtaglomerulus cell fate commitment GO:0072254 metanephric glomerular mesangial cell differentiation GO:0072255 metanephric glomerular mesangial cell development GO:0072256 metanephric glomerular mesangial cell fate commitment GO:0072257 metanephric nephron tubule epithelial cell differentiation GO:0072258 metanephric interstitial cell differentiation GO:0072259 metanephric interstitial cell development GO:0072260 metanephric interstitial cell fate commitment GO:0072261 metanephric extraglomerular mesangial cell proliferation GO:0072262 metanephric glomerular mesangial cell proliferation GO:0072263 metanephric intraglomerular mesangial cell proliferation GO:0072264 metanephric glomerular endothelium development GO:0072265 metanephric capsule morphogenesis GO:0072266 metanephric capsule formation GO:0072267 metanephric capsule specification GO:0072268 pattern specification involved in metanephros development GO:0072269 metanephric long descending thin limb development GO:0072270 metanephric short nephron development GO:0072271 metanephric short descending thin limb development GO:0072272 proximal/distal pattern formation involved in metanephric nephron development GO:0072273 metanephric nephron morphogenesis GO:0072274 metanephric glomerular basement membrane development GO:0072275 metanephric glomerulus morphogenesis GO:0072276 metanephric glomerulus vasculature morphogenesis GO:0072277 metanephric glomerular capillary formation GO:0072278 metanephric comma-shaped body morphogenesis GO:0072279 convergent extension involved in metanephric nephron morphogenesis GO:0072280 establishment of planar polarity involved in metanephric nephron morphogenesis GO:0072281 mesenchymal stem cell differentiation involved in metanephric nephron morphogenesis GO:0072282 metanephric nephron tubule morphogenesis GO:0072283 metanephric renal vesicle morphogenesis GO:0072284 metanephric S-shaped body morphogenesis GO:0072285 mesenchymal to epithelial transition involved in metanephric renal vesicle formation GO:0072286 metanephric connecting tubule development GO:0072287 metanephric distal tubule morphogenesis GO:0072288 metanephric proximal tubule morphogenesis GO:0072289 metanephric nephron tubule formation GO:0072290 epithelial cell migration involved in metanephric nephron tubule morphogenesis GO:0072291 epithelial cell migration involved in metanephric distal tubule morphogenesis GO:0072292 epithelial cell migration involved in metanephric proximal tubule morphogenesis GO:0072293 specification of metanephric nephron tubule identity GO:0072294 specification of metanephric connecting tubule identity GO:0072295 specification of metanephric distal tubule identity GO:0072296 specification of metanephric loop of Henle identity GO:0072297 specification of metanephric proximal tubule identity GO:0072298 regulation of metanephric glomerulus development GO:0072299 negative regulation of metanephric glomerulus development GO:0072300 positive regulation of metanephric glomerulus development GO:0072301 regulation of metanephric glomerular mesangial cell proliferation GO:0072302 negative regulation of metanephric glomerular mesangial cell proliferation GO:0072303 positive regulation of glomerular metanephric mesangial cell proliferation GO:0072304 regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis GO:0072305 negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis GO:0072306 positive regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis GO:0072307 regulation of metanephric nephron tubule epithelial cell differentiation GO:0072308 negative regulation of metanephric nephron tubule epithelial cell differentiation GO:0072309 mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis GO:0072310 glomerular epithelial cell development GO:0072311 glomerular epithelial cell differentiation GO:0072312 metanephric glomerular epithelial cell differentiation GO:0072313 metanephric glomerular epithelial cell development GO:0072314 glomerular epithelial cell fate commitment GO:0072315 metanephric glomerular epithelial cell fate commitment GO:0072185 metanephric cap development GO:0072186 metanephric cap morphogenesis GO:0072187 metanephric cap formation GO:0072188 metanephric cap specification GO:0072203 cell proliferation involved in metanephros development GO:0072204 cell-cell signaling involved in metanephros development GO:0072170 metanephric tubule development GO:0072171 mesonephric tubule morphogenesis GO:0072172 mesonephric tubule formation GO:0072173 metanephric tubule morphogenesis GO:0072174 metanephric tubule formation GO:0072162 metanephric mesenchymal cell differentiation GO:0072136 metanephric mesenchymal cell proliferation GO:0072133 metanephric mesenchyme morphogenesis GO:0072108 positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis GO:0072075 metanephric mesenchyme development GO:0035788 cell migration involved in metanephros development GO:0035789 metanephric mesenchymal cell migration GO:2000591 positive regulation of metanephric mesenchymal cell migration GO:0035793 positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway GO:2000004 regulation of metanephric S-shaped body morphogenesis GO:2000005 negative regulation of metanephric S-shaped body morphogenesis GO:2000006 regulation of metanephric comma-shaped body morphogenesis GO:2000007 negative regulation of metanephric comma-shaped body morphogenesis
August 2010
Mesonephros specific terms
GO:0072163 mesonephric epithelium development GO:0072164 mesonephric tubule development GO:0072165 anterior mesonephric tubule development GO:0072166 posterior mesonephric tubule development GO:0072167 specification of mesonephric tubule identity GO:0072168 specification of anterior mesonephric tubule identity GO:0072169 specification of posterior mesonephric tubule identity GO:0072171 mesonephric tubule morphogenesis GO:0072172 mesonephric tubule formation GO:0072177 mesonephric duct development GO:0072180 mesonephric duct morphogenesis GO:0072181 mesonephric duct formation GO:0061206 mesonephros morphogenesis GO:0061207 mesonephric juxtaglomerulus cell differentiation GO:0061208 cell differentiation involved in mesonephros development GO:0061209 cell proliferation involved in mesonephros development GO:0061210 cell-cell signaling involved in mesonephros development GO:0061211 mesonephric collecting duct development GO:0061212 mesonephric juxtaglomerular apparatus development GO:0061213 positive regulation of mesonephros development GO:0061214 mesonephric smooth muscle tissue development GO:0061215 mesonephric nephron development GO:0061216 regulation of transcription from RNA polymerase II promoter involved in mesonephros development GO:0061217 regulation of mesonephros development GO:0061218 negative regulation of mesonephros development GO:0061219 mesonephric mesenchyme development GO:0061220 mesonephric macula densa development GO:0061221 mesonephric mesenchyme morphogenesis GO:0061222 mesonephric mesenchymal cell proliferation GO:0061223 mesonephric mesenchymal cell differentiation GO:0061224 mesonephric glomerulus development GO:0061225 mesonephric extraglomerular mesangial cell proliferation GO:0061226 proximal/distal pattern specification involved in mesonephric nephron development GO:0061227 pattern specification involved in mesonephros development GO:0061228 mesonephric nephron morphogenesis GO:0061229 mesonephric juxtaglomerulus cell development GO:0061230 mesonephric juxtaglomerulus cell fate commitment GO:0061231 mesonephric glomerulus vasculature development GO:0061232 mesonephric glomerular epithelium development GO:0061233 mesonephric glomerular basement membrane development GO:0061234 mesonephric glomerulus morphogenesis GO:0061235 mesenchymal stem cell maintenance involved in mesonephric nephron morphogenesis GO:0061236 mesonephric comma-shaped body morphogenesis GO:0061237 convergent extension involved in mesonephric nephron morphogenesis GO:0061238 establishment of planar polarity involved in mesonephric nephron morphogenesis GO:0061239 mesenchymal stem cell differentiation involved in mesonephric nephron morphogenesis GO:0061240 mesonephric nephron tubule morphogenesis GO:0061241 nephron epithelium development GO:0061242 mesonephric nephron tubule development GO:0061243 mesonephric renal vesicle morphogenesis GO:0061244 mesonephric S-shaped body morphogenesis GO:0061247 mesonephric glomerular mesangium development GO:0061248 mesonephric glomerulus vasculature morphogenesis GO:0061249 mesonephric glomerular capillary formation GO:0061250 mesonephric glomerular epithelial cell differentiation GO:0061251 mesonephric glomerular epithelial cell development GO:0061252 mesonephric glomerular epithelial cell fate commitment GO:0061253 mesonephric glomerular parietal epithelial cell differentiation GO:0061254 mesonephric glomerular parietal epithelial cell development GO:0061255 mesonephric glomerular parietal epithelial cell fate commitment GO:0061256 mesonephric glomerular visceral epithelial cell differentiation GO:0061257 mesonephric glomerular visceral epithelial cell development GO:0061258 mesonephric glomerular visceral epithelial cell fate commitment GO:0061259 mesonephric glomerular mesangial cell differentiation GO:0061260 mesonephric mesangial cell differentiation GO:0061261 mesenchymal to epithelial transition involved in mesonephros morphogenesis GO:0061262 mesonephric renal vesicle formation GO:0061263 mesonephric glomerular mesangial cell development GO:0061264 mesonephric glomerular mesangial cell fate commitment GO:0061265 mesonephric nephron tubule epithelial cell differentiation GO:0061266 mesonephric interstitial cell differentiation GO:0061267 mesonephric interstitial cell development GO:0061268 mesonephric interstitial cell fate commitment GO:0061269 mesonephric glomerular mesangial cell proliferation GO:0061270 mesonephric intraglomerular mesangial cell proliferation GO:0061271 mesenchymal to epithelial transition involved in mesonephric renal vesicle formation GO:0061272 mesonephric connecting tubule development GO:0061273 mesonephric distal tubule morphogenesis GO:0061274 mesonephric distal tubule development GO:0061275 mesonephric proximal tubule development GO:0061276 mesonephric proximal tubule morphogenesis GO:0061277 mesonephric nephron tubule formation GO:0061278 epithelial cell migration involved in mesonephric nephron tubule morphogenesis GO:0061279 epithelial cell migration involved in mesonephric distal tubule morphogenesis GO:0061280 epithelial cell migration involved in mesonephric proximal tubule morphogenesis GO:0061281 specification of mesonephric connecting tubule identity GO:0061282 specification of mesonephric nephron tubule identity GO:0061283 specification of mesonephric distal tubule identity GO:0061284 specification of mesonephric proximal tubule identity GO:0061285 mesonephric capsule development GO:0061286 mesonephric capsule morphogenesis GO:0061287 mesonephric capsule formation GO:0061288 mesonephric capsule specification GO:0061289 Wnt receptor signaling pathway involved in kidney development GO:0061290 canonical Wnt receptor signaling pathway involved in metanephric kidney development GO:0061291 canonical Wnt receptor signaling pathway involved in ureteric bud branching GO:0061292 canonical Wnt receptor signaling pathway involved in mesonephros development GO:0061293 canonical Wnt receptor signaling pathway involved in mesonephric nephron development GO:0061294 mesonephric renal vesicle induction GO:0061295 regulation of mesenchymal stem cell apoptosis involved in mesonephric nephron morphogenesis GO:0061296 negative regulation of mesenchymal stem cell apoptosis involved in mesonephric nephron morphogenesis GO:0061297 positive regulation of mesenchymal stem cell apoptosis involved in mesonephric nephron morphogenesis
September 2010
Pronephros specific terms
GO:0039003 pronephric field specification GO:0039004 specification of pronephric proximal tubule identity GO:0039005 specification of pronephric tubule identity GO:0039006 pronephric nephron tubule formation GO:0039007 pronephric nephron morphogenesis GO:0039008 pronephric nephron tubule morphogenesis GO:0039009 rectal diverticulum development GO:0039010 specification of pronephric distal tubule identity GO:0039011 pronephric proximal tubule morphogenesis GO:0039012 pronephric sinus development GO:0039013 pronephric distal tubule morphogenesis GO:0039014 cell differentiation involved in pronephros development GO:0039015 cell proliferation involved in pronephros development GO:0039016 cell-cell signaling involved in pronephros development GO:0039017 pattern specification involved in pronephros development GO:0039018 nephrostome development GO:0039019 pronephric nephron development GO:0039020 pronephric nephron tubule development GO:0039021 pronephric glomerulus development GO:0039022 pronephric duct development GO:0039023 pronephric duct morphogenesis GO:0072114 pronephros morphogenesis GO:0072116 pronephros formation GO:0072120 pronephros maturation GO:0035775 pronephric glomerulus morphogenesis GO:0035776 pronephric proximal tubule development GO:0035777 pronephric distal tubule development GO:0035778 pronephric nephron tubule epithelial cell differentiation GO:0035779 angioblast cell differentiation
November 2010
Insect renal system specific terms
GO:0061318 renal filtration cell differentiation GO:0061319 nephrocyte differentiation GO:0061320 pericardial nephrocyte differentiation GO:0061321 garland nephrocyte differentiation GO:0061322 disseminated nephrocyte differentiation GO:0061326 renal tubule development GO:0061327 anterior Malpighian tubule development GO:0061328 posterior Malpighian tubule development GO:0061329 Malpighian tubule principle cell differentiation GO:0061330 Malpighian tubule stellate cell differentiation GO:0061331 cell proliferation involved in Malpighian tubule morphogenesis GO:0061332 Malpighian tubule bud morphogenesis GO:0061333 renal tubule morphogenesis GO:0061334 cell migration involved in Malpighian tubule morphogenesis GO:0061335 cell growth involved in Malpighian tubule morphogenesis GO:0061336 cell morphogenesis involved in Malpighian tubule morphogenesis GO:0061352 cell chemotaxis involved in Malpighian tubule morphogenesis GO:0061353 BMP signaling pathway involved in Malpighian tubule cell chemotaxis GO:0061382 Malpighian tubule tip cell differentiation