LEGO August 29, 2016
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Bluejeans URL - NOTE NEW MEETING TIME: 8:00am PST
https://bluejeans.com/969313231
Agenda
Training and Documentation
UK Training Session
- Starts Wednesday: August 31-Sept 2 at the EBI
- http://wiki.geneontology.org/index.php/2016_Hinxton_LEGO/Noctua_Training_Logistics
- http://wiki.geneontology.org/index.php/2016_Hinxton_LEGO/Noctua_Training_Agenda
- Participants: please have papers ready that you want to annotate
- Account for everyone?
USC Training Session
- Looks like the best day is 2016-11-07, the Monday after the consortium meeting
- Paul T. looking into arranging a room at USC.
Documentation
- Some comments and edits made to the Quick Start guide
- Any more comments on Quick Start Guide?
Software Updates
Updates to UI
NEO Overview and GPI Files
- Questions, issues still to be sorted out?
- We have entries for:
- Genes
- Proteins
- Transcripts
- ncRNAs
- Protein Complexes
- How should protein complexes be represented?
- We have entries for:
- Next steps - documentation of contents, communication of pipeline to other groups
MGI Meeting Follow Up
- Review the list of software and annotation issues that were discussed at the MGI training session, June 15th-16th.
- See the Google doc
- Some specific follow-up:
- GAF/GPAD output is probably highest priority
- Remaining issues:
- How to handle causal chains
- Multiple evidence = multiple lines in the GAF
- Remaining issues:
- We still need to figure out attribution. Right now everything coming in from Noctua has the group attribute GO_Noctua. That means that different groups making annotations to mouse genes cannot be distinguished.
- GAF/GPAD output is probably highest priority
LEGO Relations
- New relations needed:
- removes_input
- directionality for causally_upstream_of_or_within and causally_upstream_of
- removes_input