LEGO August 29, 2016

From GO Wiki
Jump to navigation Jump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.

Bluejeans URL - NOTE NEW MEETING TIME: 8:00am PST

https://bluejeans.com/969313231

Agenda

Training and Documentation

UK Training Session

USC Training Session

  • Looks like the best day is 2016-11-07, the Monday after the consortium meeting
  • Paul T. looking into arranging a room at USC.

Documentation

  • Some comments and edits made to the Quick Start guide
  • Any more comments on Quick Start Guide?

Software Updates

Updates to UI

NEO Overview and GPI Files

  • Questions, issues still to be sorted out?
    • We have entries for:
      • Genes
      • Proteins
      • Transcripts
      • ncRNAs
      • Protein Complexes
    • How should protein complexes be represented?
  • Next steps - documentation of contents, communication of pipeline to other groups

MGI Meeting Follow Up

  • Review the list of software and annotation issues that were discussed at the MGI training session, June 15th-16th.
  • See the Google doc
  • Some specific follow-up:
    • GAF/GPAD output is probably highest priority
      • Remaining issues:
        • How to handle causal chains
        • Multiple evidence = multiple lines in the GAF
    • We still need to figure out attribution. Right now everything coming in from Noctua has the group attribute GO_Noctua. That means that different groups making annotations to mouse genes cannot be distinguished.

LEGO Relations

  • New relations needed:
    • removes_input
      • directionality for causally_upstream_of_or_within and causally_upstream_of