LEGO March 7, 2016
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Agenda
Bluejeans
https://bluejeans.com/969313231
Software Updates
- Noctua features
- GAF/GPAD Output
Call Schedule and Model Rota
- Have weekly calls?
- Implement a rotation for presenting models?
Plans for Geneva Meetings
- BioCurator
- GO Meeting
Relations Documentation
Minutes
On call:
- Berkeley: Chris, Heiko, Seth, Suzi
- EBI: David OS
- FlyBase: Giulia, Helen
- MGI: David H
- OHSU: Dan
- USC: Paul
- WB: Kimberly
Software
- Some display fixes
- Changed format for endpoint between Noctua and TextpressoCentral (TPC)
- Still need kick-out URLs from TPC
- Add documentation/information describing connection between Noctua and TPC
- Broadcast system put in place
Call Schedule and Models Review
- Will now have a LEGO call every Monday
- Not everyone will be able to make the full call every week, but we'd like to have more frequent discussion
- Implement a rota for models review; include at least everyone who was at the Geneva meeting and would like to participate
Table Interface for Noctua
- David H and Kimberly will provide specs for a table-like interface for Noctua
- This may make some types and operations of annotation more efficient and will also be useful for doing more conventional GO annotation using Noctua
- Think about how much the table form should follow the annoton model and what that means for evidence, etc.
Meetings - Geneva
- Send Paul T. any thoughts on what to present in the LEGO/Noctua talk at BioCurator next month and also wrt conducting a LEGO workshop at the GO meeting
Models Demarcation
- What defines a model? Where should they start and end? Can different views of a process be included in the same model?
- Right now, there aren't hard and fast rules about how we define a model
- In practice, a single model can be thought of as a unit of revision or curation
- For future UI, it would be advantageous to be able to collapse specific parts of a model for better viewing
Causal Reasoning Workshop
- David OS attended a causual reasoning workshop
- Some of the work discussed is quite related to LEGO
- Would be interesting to try to do a mapping between LEGO and some of the approaches discussed, especially wrt how GO models regulation
- See: https://github.com/COLOSYS/causal-workshop-ebi