LEGO May 4 2015: Difference between revisions
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===Specific Questions/Issues=== | ===Specific Questions/Issues=== | ||
* Here are the links to the models built by David, Kimberley and Rama | * Here are the links to the models built by David, Kimberley and Rama | ||
http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000001 <br> | |||
David- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000001 <br> | |||
Kimberley- http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000032 <br> | Kimberley- http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000032 <br> | ||
Rama- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000061#<br> | Rama- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000061#<br> |
Revision as of 15:26, 3 May 2015
Agenda
Continued Discussion of March Consistency Exercise Paper
Specific Questions/Issues
- Here are the links to the models built by David, Kimberley and Rama
David- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000001
Kimberley- http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000032
Rama- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000061#
- Use of in_absence_of and in_presence_of annotation extensions.
- How to adequately capture the effects of protein binding on subsequent complex formation and resulting molecular functions.
Begin Discussion of April Consistency Exercise Paper
Specific Questions/Issues
- Use of occurs_in relation for molecular function annotations
- What constitutes sufficient evidence for adding this extension, as CC annotations may be from a different experiment than the MF annotation?
- For example, protein binding based on Y2H or whole cell lysates (IPI) with separate experiments describing localization (IDA).