LEGO May 4 2015: Difference between revisions
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==Begin Discussion of April Consistency Exercise Paper== | ==Begin Discussion of April Consistency Exercise Paper== | ||
*http://www.ncbi.nlm.nih.gov/pubmed/ | *http://www.ncbi.nlm.nih.gov/pubmed/24349431 | ||
===Specific Questions/Issues=== | ===Specific Questions/Issues=== | ||
*Use of occurs_in relation for molecular function annotations | *Use of occurs_in relation for molecular function annotations | ||
Revision as of 15:35, 1 May 2015
Agenda
Continued Discussion of March Consistency Exercise Paper
Specific Questions/Issues
- Use of in_absence_of and in_presence_of annotation extensions.
- How to adequately capture the effects of protein binding on subsequent complex formation and resulting molecular functions.
Begin Discussion of April Consistency Exercise Paper
Specific Questions/Issues
- Use of occurs_in relation for molecular function annotations
- What constitutes sufficient evidence for adding this extension, as CC annotations may be from a different experiment than the MF annotation?
- For example, protein binding based on Y2H or whole cell lysates (IPI) with separate experiments describing localization (IDA).