LEGO May 4 2015: Difference between revisions
Jump to navigation
Jump to search
Line 7: | Line 7: | ||
David- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000001 <br> | David- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000001 <br> | ||
Kimberly- http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000032 <br> | |||
Rama- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000061#<br> | Rama- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000061#<br> | ||
*Use of in_absence_of and in_presence_of annotation extensions. | *Use of in_absence_of and in_presence_of annotation extensions. |
Revision as of 11:10, 4 May 2015
Agenda
Continued Discussion of March Consistency Exercise Paper
Specific Questions/Issues
- Here are the links to the models built by David, Kimberly and Rama
David- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000001
Kimberly- http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000032
Rama- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000061#
- Use of in_absence_of and in_presence_of annotation extensions.
- How to adequately capture the effects of protein binding on subsequent complex formation and resulting molecular functions.
Begin Discussion of April Consistency Exercise Paper
Specific Questions/Issues
- Use of occurs_in relation for molecular function annotations
- What constitutes sufficient evidence for adding this extension, as CC annotations may be from a different experiment than the MF annotation?
- For example, protein binding based on Y2H or whole cell lysates (IPI) with separate experiments describing localization (IDA).
- Links to models built by David, Kimberly and Rama