Difference between revisions of "LEGO May 4 2015"

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(Specific Questions/Issues)
(Begin Discussion of April Consistency Exercise Paper)
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**What constitutes sufficient evidence for adding this extension, as CC annotations may be from a different experiment than the MF annotation?
 
**What constitutes sufficient evidence for adding this extension, as CC annotations may be from a different experiment than the MF annotation?
 
**For example, protein binding based on Y2H or whole cell lysates (IPI) with separate experiments describing localization (IDA).
 
**For example, protein binding based on Y2H or whole cell lysates (IPI) with separate experiments describing localization (IDA).
 
+
* Links to models built by David, Kimberley and Rama
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** http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000003
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** http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000051
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**http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_10090-5525a0fc0000066?barista_token=dtbkqlv0g2qj0oodfx68#
  
 
[[Category:LEGO]]
 
[[Category:LEGO]]

Revision as of 13:25, 3 May 2015

Agenda

Continued Discussion of March Consistency Exercise Paper

Specific Questions/Issues

  • Here are the links to the models built by David, Kimberley and Rama

David- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000001
Kimberley- http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000032
Rama- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000061#

  • Use of in_absence_of and in_presence_of annotation extensions.
  • How to adequately capture the effects of protein binding on subsequent complex formation and resulting molecular functions.

Begin Discussion of April Consistency Exercise Paper

Specific Questions/Issues