Difference between revisions of "LEGO May 4 2015"
From GO Wiki
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(→Begin Discussion of April Consistency Exercise Paper) |
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**What constitutes sufficient evidence for adding this extension, as CC annotations may be from a different experiment than the MF annotation? | **What constitutes sufficient evidence for adding this extension, as CC annotations may be from a different experiment than the MF annotation? | ||
**For example, protein binding based on Y2H or whole cell lysates (IPI) with separate experiments describing localization (IDA). | **For example, protein binding based on Y2H or whole cell lysates (IPI) with separate experiments describing localization (IDA). | ||
| − | + | * Links to models built by David, Kimberley and Rama | |
| + | ** http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000003 | ||
| + | ** http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000051 | ||
| + | **http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_10090-5525a0fc0000066?barista_token=dtbkqlv0g2qj0oodfx68# | ||
[[Category:LEGO]] | [[Category:LEGO]] | ||
Revision as of 13:25, 3 May 2015
Contents
Agenda
Continued Discussion of March Consistency Exercise Paper
Specific Questions/Issues
- Here are the links to the models built by David, Kimberley and Rama
David- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000001
Kimberley- http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000032
Rama- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000061#
- Use of in_absence_of and in_presence_of annotation extensions.
- How to adequately capture the effects of protein binding on subsequent complex formation and resulting molecular functions.
Begin Discussion of April Consistency Exercise Paper
Specific Questions/Issues
- Use of occurs_in relation for molecular function annotations
- What constitutes sufficient evidence for adding this extension, as CC annotations may be from a different experiment than the MF annotation?
- For example, protein binding based on Y2H or whole cell lysates (IPI) with separate experiments describing localization (IDA).
- Links to models built by David, Kimberley and Rama
