LEGO May 4 2015

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Agenda

Continued Discussion of March Consistency Exercise Paper

Specific Questions/Issues

  • Here are the links to the models built by David, Kimberly and Rama

David- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000001
Kimberly- http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000032
Rama- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000061#

  • Use of in_absence_of and in_presence_of annotation extensions.
  • How to adequately capture the effects of protein binding on subsequent complex formation and resulting molecular functions.

Begin Discussion of April Consistency Exercise Paper

Specific Questions/Issues

Discussion

March paper

  • We all looked at the model Paul built.
  • We want the ability to capture functions of complexes. Noctua should load complex IDs from IntAct. Make a github ticket for this request.