Difference between revisions of "LEGO May 4 2015"

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(Specific Questions/Issues)
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** http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000051
 
** http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000051
 
**http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_10090-5525a0fc0000066?barista_token=dtbkqlv0g2qj0oodfx68#
 
**http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_10090-5525a0fc0000066?barista_token=dtbkqlv0g2qj0oodfx68#
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=Discussion=
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===March paper===
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* We all looked at the model Paul built.
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* We want the ability to capture functions of complexes. Noctua should load complex IDs from IntAct. Make a github ticket for this request.
  
 
[[Category:LEGO]]
 
[[Category:LEGO]]

Revision as of 14:22, 12 May 2015

Agenda

Continued Discussion of March Consistency Exercise Paper

Specific Questions/Issues

  • Here are the links to the models built by David, Kimberly and Rama

David- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000001
Kimberly- http://go-genkisugi.rhcloud.com/seed/model/gomodel:5525a0fc0000032
Rama- http://go-genkisugi.rhcloud.com/seed/model/gomodel:taxon_559292-5525a0fc0000061#

  • Use of in_absence_of and in_presence_of annotation extensions.
  • How to adequately capture the effects of protein binding on subsequent complex formation and resulting molecular functions.

Begin Discussion of April Consistency Exercise Paper

Specific Questions/Issues

Discussion

March paper

  • We all looked at the model Paul built.
  • We want the ability to capture functions of complexes. Noctua should load complex IDs from IntAct. Make a github ticket for this request.