LEGO October 10, 2016: Difference between revisions
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Line 16: | Line 16: | ||
***Required: | ***Required: | ||
****!gpi-version: 1.2 | ****!gpi-version: 1.2 | ||
***Other possible | ***Other possible tag value-pairs: | ||
****!Date: 20161010 | ****!Date: 20161010 | ||
****!Project_name: WB | ****!Project_name: WB | ||
****!Contact_email: help@wormbase.org | |||
****!URL: http://www.wormbase.org | |||
****!WB_release: WS256 | |||
***Other possible content: | |||
****Explanation of gpi file fields | |||
****Explanation of entities represented, e.g. Reference Proteome | |||
**Contents of file - what's required, what's optional, format | |||
***Required fields are indicated in github doc, website | |||
***Entities needed for curation should be included in gpi file | |||
***Clarification needed on: | |||
****Entity namespace in Column 1? | |||
****taxon prefix, i.e. 6239 or taxon:6239? | |||
**Column 1 - contains namespace for ID found in Column 2 | **Column 1 - contains namespace for ID found in Column 2 | ||
**[https://drive.google.com/drive/folders/0B8kRPmmvPJU3c2d3TUpTOWotZzg Kimberly's Google doc on gpi specs for website] | **[https://drive.google.com/drive/folders/0B8kRPmmvPJU3c2d3TUpTOWotZzg Kimberly's Google doc on gpi specs for website] |
Revision as of 10:26, 10 October 2016
Bluejeans URL - NOTE NEW MEETING TIME: 8:00am PST
https://bluejeans.com/969313231
Agenda
Software Updates
- Monday morning - no existing models visible after login
GAF/GPAD Updates
GPI Files
- Review specifications
- Groups will need to start submitting these files routinely, but there are still a few aspects of the specifications that need to be clarified and then documented on github, website
- Chris' gpad-gpi docs on github
- Contents of header - what's required, what's optional, format for tag value-pairs, format for free text
- Required:
- !gpi-version: 1.2
- Other possible tag value-pairs:
- !Date: 20161010
- !Project_name: WB
- !Contact_email: help@wormbase.org
- !URL: http://www.wormbase.org
- !WB_release: WS256
- Other possible content:
- Explanation of gpi file fields
- Explanation of entities represented, e.g. Reference Proteome
- Required:
- Contents of file - what's required, what's optional, format
- Required fields are indicated in github doc, website
- Entities needed for curation should be included in gpi file
- Clarification needed on:
- Entity namespace in Column 1?
- taxon prefix, i.e. 6239 or taxon:6239?
- Column 1 - contains namespace for ID found in Column 2
- Kimberly's Google doc on gpi specs for website