LEGO October 10, 2016
Bluejeans URL - NOTE NEW MEETING TIME: 8:00am PST
https://bluejeans.com/969313231
Agenda
Software Updates
- Monday morning - no existing models visible after login
GAF/GPAD Updates
GPI Files
- Review specifications
- Groups will need to start submitting these files routinely, but there are still a few aspects of the specifications that need to be clarified and then documented on github, website
- Chris' gpad-gpi docs on github
- Contents of header - what's required, what's optional, format for tag value-pairs, format for free text
- Required:
- !gpi-version: 1.2
- Other possible tag value-pairs:
- !Date: 20161010
- !Project_name: WB
- !Contact_email: help@wormbase.org
- !URL: http://www.wormbase.org
- !WB_release: WS256
- Other possible content:
- Explanation of gpi file fields
- Explanation of entities represented, e.g. Reference Proteome
- Required:
- Contents of file - what's required, what's optional, format
- Required fields are indicated in github doc, website
- Entities needed for curation should be included in gpi file
- Clarification needed on:
- Entity namespace in Column 1?
- taxon prefix, i.e. 6239 or taxon:6239?
- Column 1 - contains namespace for ID found in Column 2
- Kimberly's Google doc on gpi specs for website