MENGO Cellulosome: Difference between revisions
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==Trudy_5/10/11== | |||
===BIOLOGICAL PROCESS ONTOLOGY=== | |||
====GO:XXXXXX3:cellulosome assembly==== | |||
namespace: biological_process | |||
def: “The assembly of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall | |||
is_a: GO:0030031! cell projection assembly | |||
comment: Check Cellulosome definition in GO to see if it should be changed. | |||
Synonyms: Protuberances, appendage | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX4:regulation of cellulosome assembly==== | |||
namespace: biological_process | |||
def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”. | |||
regulates ( R) GO:XXXXXX3! cellulosome assembly | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX5:positive regulation of cellulosome assembly==== | |||
namespace: biological_process | |||
def: “Any process that activates or increases the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”. | |||
is_a: GO:XXXXXX4 ! regulation of cellulosome assembly | |||
====GO:XXXXXX6:negative regulation of cellulosome assembly==== | |||
namespace: biological_process | |||
def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulases, hemicellulase and pectin in the plant cell wall”. | |||
is_a: GO:XXXXXX4 ! regulation of cellulosome assembly | |||
====GO:XXXXXX8:maintenance of location on cell surface==== | |||
namespace: biological_process | |||
def: “The process in which the cellulosome is anchored to the cell surface” | |||
is_a: GO:0051235! maintenance of location ???? add anchor to the synonyms?? | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX9:maintenance of protein complex location on cell surface==== | |||
namespace: biological_process | |||
def: “The process in which a protein complex is anchored to the cell surface” | |||
is_a: GO:XXXXXX8! maintenance of location ???? add anchor to the synonyms?? | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX:cellulosome anchoring to cell surface==== | |||
namespace: biological_process | |||
def: “The process in which the cellulosome is anchored to the cell surface” | |||
is_a: GO: XXXXXX9! maintenance of protein complex location on cell surface | |||
cue: GO:0032065 cortical protein anchoring | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX17:catabolism of plant cell wall components via/by cellulosome proteins==== | |||
namespace: biological_process | |||
def: The chemical reactions and pathways resulting in the breakdown of cell wall components mediated by cellulosome proteins. | |||
is_a: GO:0009056 catabolic process! | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX18:catabolism of plant cell wall cellulose via/by cellulosome proteins==== | |||
namespace: biological_process | |||
def: The chemical reactions and pathways resulting in the breakdown of cell wall cellulose mediated by cellulosome proteins | |||
is_a: GO: XXXXXX17! | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX12:catabolism of plant cell wall hemicellulose via/by cellulosome proteins==== | |||
namespace: biological_process | |||
def: The chemical reactions and pathways resulting in the breakdown of cell wall hemicellulose mediated by cellulosome proteins. [GOC:MENGO_TT] | |||
is_a: GO: XXXXXX17 | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX20:catabolism of plant cell wall pectin via/by cellulosome proteins==== | |||
namespace: biological_process | |||
def: The chemical reactions and pathways resulting in the breakdown of cell wall pectin mediated by cellulosome proteins. [GOC:MENGO_TT] | |||
is_a: GO: XXXXXX17! | |||
[GOC:MENGO_TT] | |||
===MOLECULAR FUNCTION ONTOLOGY=== | |||
====GO:XXXXXX12:cellulosome protein anchor==== | |||
namespace: molecular_function | |||
def: “interacting non-covalently with a protein or membrane Any process that modulates the frequency, rate or extent of the formation of a cellulosome”. | |||
is_a: GO:0043495 ! protein anchor | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX21:cellulose binding via cellulosome protein==== | |||
namespace: molecular function | |||
def:Interacting selectively and non-covalently with cellulose via cellulosome protein containing carbohydrate binding domain (CBM) | |||
is_a : GO:0030248! Cellulose binding | |||
We can add via CBM if we want to be more specific | |||
[GOC:MENGO_TT] |
Revision as of 12:40, 11 May 2011
Working Group Members
Trudy_5/10/11
BIOLOGICAL PROCESS ONTOLOGY
GO:XXXXXX3:cellulosome assembly
namespace: biological_process
def: “The assembly of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall
is_a: GO:0030031! cell projection assembly
comment: Check Cellulosome definition in GO to see if it should be changed.
Synonyms: Protuberances, appendage
[GOC:MENGO_TT]
GO:XXXXXX4:regulation of cellulosome assembly
namespace: biological_process
def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.
regulates ( R) GO:XXXXXX3! cellulosome assembly
[GOC:MENGO_TT]
GO:XXXXXX5:positive regulation of cellulosome assembly
namespace: biological_process
def: “Any process that activates or increases the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.
is_a: GO:XXXXXX4 ! regulation of cellulosome assembly
GO:XXXXXX6:negative regulation of cellulosome assembly
namespace: biological_process
def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulases, hemicellulase and pectin in the plant cell wall”.
is_a: GO:XXXXXX4 ! regulation of cellulosome assembly
GO:XXXXXX8:maintenance of location on cell surface
namespace: biological_process
def: “The process in which the cellulosome is anchored to the cell surface”
is_a: GO:0051235! maintenance of location ???? add anchor to the synonyms??
[GOC:MENGO_TT]
GO:XXXXXX9:maintenance of protein complex location on cell surface
namespace: biological_process
def: “The process in which a protein complex is anchored to the cell surface”
is_a: GO:XXXXXX8! maintenance of location ???? add anchor to the synonyms??
[GOC:MENGO_TT]
GO:XXXXXX:cellulosome anchoring to cell surface
namespace: biological_process
def: “The process in which the cellulosome is anchored to the cell surface”
is_a: GO: XXXXXX9! maintenance of protein complex location on cell surface
cue: GO:0032065 cortical protein anchoring
[GOC:MENGO_TT]
GO:XXXXXX17:catabolism of plant cell wall components via/by cellulosome proteins
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall components mediated by cellulosome proteins.
is_a: GO:0009056 catabolic process!
[GOC:MENGO_TT]
GO:XXXXXX18:catabolism of plant cell wall cellulose via/by cellulosome proteins
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall cellulose mediated by cellulosome proteins is_a: GO: XXXXXX17!
[GOC:MENGO_TT]
GO:XXXXXX12:catabolism of plant cell wall hemicellulose via/by cellulosome proteins
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall hemicellulose mediated by cellulosome proteins. [GOC:MENGO_TT]
is_a: GO: XXXXXX17
[GOC:MENGO_TT]
GO:XXXXXX20:catabolism of plant cell wall pectin via/by cellulosome proteins
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall pectin mediated by cellulosome proteins. [GOC:MENGO_TT]
is_a: GO: XXXXXX17!
[GOC:MENGO_TT]
MOLECULAR FUNCTION ONTOLOGY
GO:XXXXXX12:cellulosome protein anchor
namespace: molecular_function
def: “interacting non-covalently with a protein or membrane Any process that modulates the frequency, rate or extent of the formation of a cellulosome”. is_a: GO:0043495 ! protein anchor
[GOC:MENGO_TT]
GO:XXXXXX21:cellulose binding via cellulosome protein
namespace: molecular function
def:Interacting selectively and non-covalently with cellulose via cellulosome protein containing carbohydrate binding domain (CBM)
is_a : GO:0030248! Cellulose binding
We can add via CBM if we want to be more specific
[GOC:MENGO_TT]