MENGO Cellulosome: Difference between revisions

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==Trudy_5/10/11==
===BIOLOGICAL PROCESS ONTOLOGY===
====GO:XXXXXX3:cellulosome assembly====
namespace: biological_process
def: “The assembly of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall
is_a: GO:0030031! cell projection assembly
comment: Check Cellulosome definition in GO to see if it should be changed.
 
Synonyms: Protuberances, appendage
[GOC:MENGO_TT]
====GO:XXXXXX4:regulation of cellulosome assembly====
namespace: biological_process
def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.
regulates ( R) GO:XXXXXX3! cellulosome assembly
[GOC:MENGO_TT]
====GO:XXXXXX5:positive regulation of cellulosome assembly====
namespace: biological_process
def: “Any process that activates or increases the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.
is_a: GO:XXXXXX4 ! regulation of cellulosome assembly
====GO:XXXXXX6:negative regulation of cellulosome assembly====
namespace: biological_process
def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulases, hemicellulase and pectin in the plant cell wall”.
is_a: GO:XXXXXX4 ! regulation of cellulosome assembly
====GO:XXXXXX8:maintenance of location on cell surface====
namespace: biological_process
def: “The process in which the cellulosome is anchored to the cell surface”
is_a: GO:0051235! maintenance of  location ???? add anchor to the synonyms??
[GOC:MENGO_TT]
====GO:XXXXXX9:maintenance of protein complex location on cell surface====
namespace: biological_process
def: “The process in which a protein complex is anchored to the cell surface”
is_a: GO:XXXXXX8! maintenance of  location ???? add anchor to the synonyms??
[GOC:MENGO_TT]
====GO:XXXXXX:cellulosome anchoring to cell surface====
namespace: biological_process
def: “The process in which the cellulosome is anchored to the cell surface”
is_a: GO: XXXXXX9! maintenance of protein complex location on cell surface
cue: GO:0032065 cortical protein anchoring
[GOC:MENGO_TT]
====GO:XXXXXX17:catabolism of plant cell wall  components via/by cellulosome proteins====
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall components mediated by cellulosome proteins.
is_a: GO:0009056 catabolic process!
[GOC:MENGO_TT]
====GO:XXXXXX18:catabolism of plant cell wall  cellulose via/by cellulosome proteins====
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall cellulose mediated by cellulosome proteins
is_a: GO: XXXXXX17!
[GOC:MENGO_TT]
====GO:XXXXXX12:catabolism of plant cell wall  hemicellulose via/by cellulosome proteins====
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall hemicellulose mediated by cellulosome proteins. [GOC:MENGO_TT]
is_a: GO: XXXXXX17
[GOC:MENGO_TT]
====GO:XXXXXX20:catabolism of plant cell wall pectin via/by cellulosome proteins====
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall pectin mediated by cellulosome proteins. [GOC:MENGO_TT]
is_a: GO: XXXXXX17!
[GOC:MENGO_TT]
===MOLECULAR FUNCTION ONTOLOGY===
====GO:XXXXXX12:cellulosome protein anchor====
namespace: molecular_function
def: “interacting non-covalently with a protein or membrane Any process that modulates the frequency, rate or extent of the formation of a cellulosome”.
is_a: GO:0043495 ! protein anchor
[GOC:MENGO_TT]
====GO:XXXXXX21:cellulose binding via cellulosome protein====
namespace: molecular function
def:Interacting selectively and non-covalently with cellulose via cellulosome protein  containing carbohydrate binding domain (CBM)
is_a : GO:0030248! Cellulose binding
We can add via CBM if we want to be more specific
[GOC:MENGO_TT]

Revision as of 12:40, 11 May 2011

Working Group Members

Trudy_5/10/11

BIOLOGICAL PROCESS ONTOLOGY

GO:XXXXXX3:cellulosome assembly

namespace: biological_process

def: “The assembly of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall

is_a: GO:0030031! cell projection assembly

comment: Check Cellulosome definition in GO to see if it should be changed.

Synonyms: Protuberances, appendage

[GOC:MENGO_TT]

GO:XXXXXX4:regulation of cellulosome assembly

namespace: biological_process

def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.

regulates ( R) GO:XXXXXX3! cellulosome assembly

[GOC:MENGO_TT]

GO:XXXXXX5:positive regulation of cellulosome assembly

namespace: biological_process

def: “Any process that activates or increases the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.

is_a: GO:XXXXXX4 ! regulation of cellulosome assembly

GO:XXXXXX6:negative regulation of cellulosome assembly

namespace: biological_process

def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulases, hemicellulase and pectin in the plant cell wall”.

is_a: GO:XXXXXX4 ! regulation of cellulosome assembly

GO:XXXXXX8:maintenance of location on cell surface

namespace: biological_process

def: “The process in which the cellulosome is anchored to the cell surface”

is_a: GO:0051235! maintenance of location ???? add anchor to the synonyms??

[GOC:MENGO_TT]


GO:XXXXXX9:maintenance of protein complex location on cell surface

namespace: biological_process

def: “The process in which a protein complex is anchored to the cell surface”

is_a: GO:XXXXXX8! maintenance of location ???? add anchor to the synonyms??

[GOC:MENGO_TT]

GO:XXXXXX:cellulosome anchoring to cell surface

namespace: biological_process

def: “The process in which the cellulosome is anchored to the cell surface”

is_a: GO: XXXXXX9! maintenance of protein complex location on cell surface

cue: GO:0032065 cortical protein anchoring

[GOC:MENGO_TT]

GO:XXXXXX17:catabolism of plant cell wall components via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall components mediated by cellulosome proteins.

is_a: GO:0009056 catabolic process!

[GOC:MENGO_TT]

GO:XXXXXX18:catabolism of plant cell wall cellulose via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall cellulose mediated by cellulosome proteins is_a: GO: XXXXXX17!

[GOC:MENGO_TT]

GO:XXXXXX12:catabolism of plant cell wall hemicellulose via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall hemicellulose mediated by cellulosome proteins. [GOC:MENGO_TT]

is_a: GO: XXXXXX17

[GOC:MENGO_TT]

GO:XXXXXX20:catabolism of plant cell wall pectin via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall pectin mediated by cellulosome proteins. [GOC:MENGO_TT]

is_a: GO: XXXXXX17!

[GOC:MENGO_TT]



MOLECULAR FUNCTION ONTOLOGY

GO:XXXXXX12:cellulosome protein anchor

namespace: molecular_function

def: “interacting non-covalently with a protein or membrane Any process that modulates the frequency, rate or extent of the formation of a cellulosome”. is_a: GO:0043495 ! protein anchor

[GOC:MENGO_TT]

GO:XXXXXX21:cellulose binding via cellulosome protein

namespace: molecular function

def:Interacting selectively and non-covalently with cellulose via cellulosome protein containing carbohydrate binding domain (CBM)

is_a : GO:0030248! Cellulose binding

We can add via CBM if we want to be more specific

[GOC:MENGO_TT]