MENGO Cellulosome: Difference between revisions

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namespace: cellular_component
namespace: cellular_component


def: proteins which promotes binding of cellulose to the catalytic domains of the cellulolytic enzymes.
def: proteins which promotes binding of cellulose to the catalytic domains of the cellulolytic enzymes. In cellulosome, this group of proteins is named Scaffoldin.  Its function is to organize and position other protein subunits into cellulosome
    
    
part_of: GO:XXXXXXX11! cellulosome part
part_of: GO:XXXXXXX11! cellulosome part


[GOC:MENGO_EP]
[GOC:MENGO_EP]

Revision as of 08:33, 17 May 2011

Working Group Members

Trudy_5/10/11

BIOLOGICAL PROCESS ONTOLOGY

GO:XXXXXX3:cellulosome assembly

namespace: biological_process

def: “The assembly of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall

is_a: GO:0030031! cell projection assembly

comment: Check Cellulosome definition in GO to see if it should be changed.

Synonyms: Protuberances, appendage

[GOC:MENGO_TT]

GO:XXXXXX4:regulation of cellulosome assembly

namespace: biological_process

def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.

regulates ( R) GO:XXXXXX3! cellulosome assembly

[GOC:MENGO_TT]

GO:XXXXXX5:positive regulation of cellulosome assembly

namespace: biological_process

def: “Any process that activates or increases the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.

is_a: GO:XXXXXX4 ! regulation of cellulosome assembly

GO:XXXXXX6:negative regulation of cellulosome assembly

namespace: biological_process

def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulases, hemicellulase and pectin in the plant cell wall”.

is_a: GO:XXXXXX4 ! regulation of cellulosome assembly

GO:XXXXXX8:maintenance of location on cell surface

namespace: biological_process

def: “The process in which the cellulosome is anchored to the cell surface”

is_a: GO:0051235! maintenance of location ???? add anchor to the synonyms??

[GOC:MENGO_TT]


GO:XXXXXX9:maintenance of protein complex location on cell surface

namespace: biological_process

def: “The process in which a protein complex is anchored to the cell surface”

is_a: GO:XXXXXX8! maintenance of location ???? add anchor to the synonyms??

[GOC:MENGO_TT]

GO:XXXXXX:cellulosome anchoring to cell surface

namespace: biological_process

def: “The process in which the cellulosome is anchored to the cell surface”

is_a: GO: XXXXXX9! maintenance of protein complex location on cell surface

cue: GO:0032065 cortical protein anchoring

[GOC:MENGO_TT]

GO:XXXXXX17:catabolism of plant cell wall components via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall components mediated by cellulosome proteins.

is_a: GO:0009056 catabolic process!

[GOC:MENGO_TT]

GO:XXXXXX18:catabolism of plant cell wall cellulose via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall cellulose mediated by cellulosome proteins is_a: GO: XXXXXX17!

[GOC:MENGO_TT]

GO:XXXXXX12:catabolism of plant cell wall hemicellulose via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall hemicellulose mediated by cellulosome proteins. [GOC:MENGO_TT]

is_a: GO: XXXXXX17

[GOC:MENGO_TT]

GO:XXXXXX20:catabolism of plant cell wall pectin via/by cellulosome proteins

namespace: biological_process

def: The chemical reactions and pathways resulting in the breakdown of cell wall pectin mediated by cellulosome proteins. [GOC:MENGO_TT]

is_a: GO: XXXXXX17!

[GOC:MENGO_TT]


Trudy_5/10/11

MOLECULAR FUNCTION ONTOLOGY

GO:XXXXXX12:cellulosome protein anchor

namespace: molecular_function

def: “interacting non-covalently with a protein or membrane Any process that modulates the frequency, rate or extent of the formation of a cellulosome”. is_a: GO:0043495 ! protein anchor

[GOC:MENGO_TT]

GO:XXXXXX21:cellulose binding via cellulosome protein

namespace: molecular function

def:Interacting selectively and non-covalently with cellulose via cellulosome protein containing carbohydrate binding domain (CBM)

is_a : GO:0030248! Cellulose binding

We can add via CBM if we want to be more specific

[GOC:MENGO_TT]

Endang_05/17/11

CELLULAR COMPONENT

GO:XXXXXX11:cellulosome part

namespace: cellular_component

def: Any constituent part of a cellulosome, an extracellular multi-enzyme complex containing several different enzymes aligned on a non-catalytic scaffolding glycoprotein

part_of: GO:0043263! Cellulosome

[GOC:MENGO_EP]

GO:XXXXXX12: cellulosome anchorage protein

namespace: cellular_component

def: proteins which anchor the cellulosome or individual enzymes to the bacterial cell surface. It may have the S Layer Homolog (SLH) modules or SLH domains

part_of: GO:XXXXXXX11! Cellulosome part

[GOC:MENGO_EP]

GO:XXXXXX13:cellulosomal scaffolding proteins

namespace: cellular_component

def: proteins which promotes binding of cellulose to the catalytic domains of the cellulolytic enzymes. In cellulosome, this group of proteins is named Scaffoldin. Its function is to organize and position other protein subunits into cellulosome

part_of: GO:XXXXXXX11! cellulosome part

[GOC:MENGO_EP]