MENGO Cellulosome: Difference between revisions
No edit summary |
No edit summary |
||
(8 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
[[Category:Content_MENGO]] | |||
Working Group Members | Working Group Members | ||
* | * | ||
Line 185: | Line 186: | ||
===CELLULAR COMPONENT=== | ===CELLULAR COMPONENT=== | ||
====GO:XXXXXX11:cellulosome part==== | ====GO:XXXXXX11: cellulosome part==== | ||
namespace: cellular_component | namespace: cellular_component | ||
Line 205: | Line 206: | ||
[GOC:MENGO_EP] | [GOC:MENGO_EP] | ||
====GO:XXXXXX13:cellulosomal scaffolding proteins==== | ====GO:XXXXXX13: cellulosomal scaffolding proteins==== | ||
namespace: cellular_component | namespace: cellular_component | ||
Line 214: | Line 215: | ||
[GOC:MENGO_EP] | [GOC:MENGO_EP] | ||
====GO:XXXXXX14: Scaffoldin containing type I Cohesin ==== | |||
namespace: cellular_component | |||
def: Scaffoldin protein containing type I Cohesin domain. Type I Cohesin domain will interact with type I Dockerin which is part of the catalytic protein in cellulosome | |||
part_of: GO:XXXXXXX13! cellulosome scaffolding proteins | |||
[GOC:MENGO_EP] | |||
====GO:XXXXXX15: Scaffoldin containing type II Cohesin ==== | |||
namespace: cellular_component | |||
def: Scaffoldin protein containing type II Cohesin domain. Type II Cohesin domain will interact with type II Dockerin which is part of the catalytic protein in cellulosome | |||
part_of: GO:XXXXXXX13! cellulosome scaffolding proteins | |||
[GOC:MENGO_EP] | |||
====GO:XXXXXX16: Scaffoldin containing type III Cohesin ==== | |||
namespace: cellular_component | |||
def: Scaffoldin protein containing type III Cohesin domain. Type III Cohesin domain will interact with type III Dockerin which is part of the catalytic protein in cellulosome | |||
part_of: GO:XXXXXXX13! cellulosome scaffolding proteins | |||
[GOC:MENGO_EP] | |||
==Trudy_05/29/11== | |||
====GO:XXXXXX91:primary cell wall cellulose synthase complex==== | |||
namespace: cellular component | |||
def: The multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the primary cell wall | |||
is_a : GO:0010330: cellulose synthase complex | |||
[GOC:MENGO_TT] | |||
====GO:XXXXXX92: secondary cell wall cellulose synthase complex==== | |||
namespace: cellular component | |||
def: The multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the secondary cell wall | |||
is_a : GO:0010330: cellulose synthase complex | |||
[GOC:MENGO_TT] | |||
==Trudy_07/12/11== | |||
====GO:XXXXXX92: scaffoldin protein binding==== | |||
namespace: molecular function | |||
def: | |||
is_a : protein binding | |||
[GOC:MENGO_TT] |
Latest revision as of 18:56, 27 May 2014
Working Group Members
Trudy_5/10/11
BIOLOGICAL PROCESS ONTOLOGY
GO:XXXXXX3:cellulosome assembly
namespace: biological_process
def: “The assembly of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall
is_a: GO:0030031! cell projection assembly
comment: Check Cellulosome definition in GO to see if it should be changed.
Synonyms: Protuberances, appendage
[GOC:MENGO_TT]
GO:XXXXXX4:regulation of cellulosome assembly
namespace: biological_process
def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.
regulates ( R) GO:XXXXXX3! cellulosome assembly
[GOC:MENGO_TT]
GO:XXXXXX5:positive regulation of cellulosome assembly
namespace: biological_process
def: “Any process that activates or increases the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulase, hemicellulase and pectin in the plant cell wall”.
is_a: GO:XXXXXX4 ! regulation of cellulosome assembly
GO:XXXXXX6:negative regulation of cellulosome assembly
namespace: biological_process
def: “Any process that modulates the frequency, rate or extent of the formation of a cellulosome, a macromolecular multi-enzyme complex in bacteria that facilitates the deconstruction/breakdown of cellulases, hemicellulase and pectin in the plant cell wall”.
is_a: GO:XXXXXX4 ! regulation of cellulosome assembly
GO:XXXXXX8:maintenance of location on cell surface
namespace: biological_process
def: “The process in which the cellulosome is anchored to the cell surface”
is_a: GO:0051235! maintenance of location ???? add anchor to the synonyms??
[GOC:MENGO_TT]
GO:XXXXXX9:maintenance of protein complex location on cell surface
namespace: biological_process
def: “The process in which a protein complex is anchored to the cell surface”
is_a: GO:XXXXXX8! maintenance of location ???? add anchor to the synonyms??
[GOC:MENGO_TT]
GO:XXXXXX:cellulosome anchoring to cell surface
namespace: biological_process
def: “The process in which the cellulosome is anchored to the cell surface”
is_a: GO: XXXXXX9! maintenance of protein complex location on cell surface
cue: GO:0032065 cortical protein anchoring
[GOC:MENGO_TT]
GO:XXXXXX17:catabolism of plant cell wall components via/by cellulosome proteins
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall components mediated by cellulosome proteins.
is_a: GO:0009056 catabolic process!
[GOC:MENGO_TT]
GO:XXXXXX18:catabolism of plant cell wall cellulose via/by cellulosome proteins
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall cellulose mediated by cellulosome proteins is_a: GO: XXXXXX17!
[GOC:MENGO_TT]
GO:XXXXXX12:catabolism of plant cell wall hemicellulose via/by cellulosome proteins
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall hemicellulose mediated by cellulosome proteins. [GOC:MENGO_TT]
is_a: GO: XXXXXX17
[GOC:MENGO_TT]
GO:XXXXXX20:catabolism of plant cell wall pectin via/by cellulosome proteins
namespace: biological_process
def: The chemical reactions and pathways resulting in the breakdown of cell wall pectin mediated by cellulosome proteins. [GOC:MENGO_TT]
is_a: GO: XXXXXX17!
[GOC:MENGO_TT]
==Trudy_5/10/11==
MOLECULAR FUNCTION ONTOLOGY
GO:XXXXXX12:cellulosome protein anchor
namespace: molecular_function
def: “interacting non-covalently with a protein or membrane Any process that modulates the frequency, rate or extent of the formation of a cellulosome”. is_a: GO:0043495 ! protein anchor
[GOC:MENGO_TT]
GO:XXXXXX21:cellulose binding via cellulosome protein
namespace: molecular function
def:Interacting selectively and non-covalently with cellulose via cellulosome protein containing carbohydrate binding domain (CBM)
is_a : GO:0030248! Cellulose binding
We can add via CBM if we want to be more specific
[GOC:MENGO_TT]
Endang_05/17/11
GO:XXXXXX22: cellulose binding via interaction of Cohesin type I and Dockerin type I
namespace: molecular_function
def: Interacting selectively and non-covalently with cellulose via interaction of Cohesin type I with Dockerin type I
is_a : GO:0030248! Cellulose binding
[GOC:MENGO_EP]
GO:XXXXXX23: cellulose binding via interaction of Cohesin type II and Dockerin type II
namespace: molecular_function
def: Interacting selectively and non-covalently with cellulose via interaction of Cohesin type II with Dockerin type II
is_a : GO:0030248! Cellulose binding
[GOC:MENGO_EP]
GO:XXXXXX24: cellulose binding via interaction of Cohesin type III and Dockerin type III
namespace: molecular_function
def: Interacting selectively and non-covalently with cellulose via interaction of Cohesin type III with Dockerin type III
is_a : GO:0030248! Cellulose binding
[GOC:MENGO_EP]
Endang_05/17/11
CELLULAR COMPONENT
GO:XXXXXX11: cellulosome part
namespace: cellular_component
def: Any constituent part of a cellulosome, an extracellular multi-enzyme complex containing several different enzymes aligned on a non-catalytic scaffolding glycoprotein
part_of: GO:0043263! Cellulosome
[GOC:MENGO_EP]
GO:XXXXXX12: cellulosome anchorage protein
namespace: cellular_component
def: proteins which anchor the cellulosome or individual enzymes to the bacterial cell surface. It may have the S Layer Homolog (SLH) modules or SLH domains
part_of: GO:XXXXXXX11! Cellulosome part
[GOC:MENGO_EP]
GO:XXXXXX13: cellulosomal scaffolding proteins
namespace: cellular_component
def: proteins which promotes binding of cellulose to the catalytic domains of the cellulolytic enzymes. In cellulosome, this group of proteins is named Scaffoldin. Its function is to organize and position other protein subunits into cellulosome
part_of: GO:XXXXXXX11! cellulosome part
[GOC:MENGO_EP]
GO:XXXXXX14: Scaffoldin containing type I Cohesin
namespace: cellular_component
def: Scaffoldin protein containing type I Cohesin domain. Type I Cohesin domain will interact with type I Dockerin which is part of the catalytic protein in cellulosome
part_of: GO:XXXXXXX13! cellulosome scaffolding proteins
[GOC:MENGO_EP]
GO:XXXXXX15: Scaffoldin containing type II Cohesin
namespace: cellular_component
def: Scaffoldin protein containing type II Cohesin domain. Type II Cohesin domain will interact with type II Dockerin which is part of the catalytic protein in cellulosome
part_of: GO:XXXXXXX13! cellulosome scaffolding proteins
[GOC:MENGO_EP]
GO:XXXXXX16: Scaffoldin containing type III Cohesin
namespace: cellular_component
def: Scaffoldin protein containing type III Cohesin domain. Type III Cohesin domain will interact with type III Dockerin which is part of the catalytic protein in cellulosome
part_of: GO:XXXXXXX13! cellulosome scaffolding proteins
[GOC:MENGO_EP]
Trudy_05/29/11
GO:XXXXXX91:primary cell wall cellulose synthase complex
namespace: cellular component
def: The multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the primary cell wall
is_a : GO:0010330: cellulose synthase complex [GOC:MENGO_TT]
GO:XXXXXX92: secondary cell wall cellulose synthase complex
namespace: cellular component
def: The multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the secondary cell wall
is_a : GO:0010330: cellulose synthase complex
[GOC:MENGO_TT]
Trudy_07/12/11
GO:XXXXXX92: scaffoldin protein binding
namespace: molecular function
def:
is_a : protein binding
[GOC:MENGO_TT]