MENGO Deconstruction: Difference between revisions

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= Trudy 2/22/11 =
= Trudy 2/22/11(excerpts from 1st MENGO workshop) =
# ''General ideas/terms proposed include:''
# ''General ideas/terms proposed include:''
'''''All catabolic-related terms will have corresponding biosynthesis-related terms'''''
'''''Bolded italicised terms are currently missing in the Gene Ontology'''''
  GO:0016052 carbohydrate metabolic process
  GO:0016052 carbohydrate metabolic process
     GO:0005976 polysaccharide metabolic process
     GO:0005976 polysaccharide metabolic process
         GO:0000272 polysaccharide catabolic process  
         GO:0000272 polysaccharide catabolic process
 
              GO:0005983 starch catabolic process
 
              GO:0030245 cellulose catabolic process
 
              '''''hemicellulose catabolic process'''''
 
                        GO:0045493 xylan catabolic process
 
                        GO:0046355 mannan catabolic process
 
                        '''''xyloglucan catabolic process'''''
 
              GO:0045490 pectin catabolic process
 




2. Other areas to consider:
Degradation of storage carbohydrate
  Degradation of organelle carbohydrate
    Degradation of plastids


3. Cross link breaking
  backbone
  side chain


=== Joao 2/23/11 ===
4. Soluble phenolics

Latest revision as of 22:29, 24 February 2011

Working group members:

  • Biswarup Mukhopadhyay (Lead)
  • Adam Book
  • Garret Suen


Trudy 2/22/11(excerpts from 1st MENGO workshop)

  1. General ideas/terms proposed include:

All catabolic-related terms will have corresponding biosynthesis-related terms

Bolded italicised terms are currently missing in the Gene Ontology

GO:0016052 carbohydrate metabolic process
    GO:0005976 polysaccharide metabolic process
        GO:0000272 polysaccharide catabolic process
             GO:0005983 starch catabolic process
             GO:0030245 cellulose catabolic process
             hemicellulose catabolic process
                       GO:0045493 xylan catabolic process
                       GO:0046355 mannan catabolic process
                       xyloglucan catabolic process
              GO:0045490 pectin catabolic process


2. Other areas to consider: Degradation of storage carbohydrate

  Degradation of organelle carbohydrate
    Degradation of plastids

3. Cross link breaking

  backbone
  side chain

4. Soluble phenolics