MENGO Deconstruction: Difference between revisions
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= Trudy 2/22/11 = | = Trudy 2/22/11(excerpts from 1st MENGO workshop) = | ||
# ''General ideas/terms proposed include:'' | # ''General ideas/terms proposed include:'' | ||
'''''All catabolic-related terms will have corresponding biosynthesis-related terms''''' | |||
'''''Bolded italicised terms are currently missing in the Gene Ontology''''' | |||
GO:0016052 carbohydrate metabolic process | GO:0016052 carbohydrate metabolic process | ||
GO:0005976 polysaccharide metabolic process | GO:0005976 polysaccharide metabolic process | ||
Line 16: | Line 19: | ||
GO:0005983 starch catabolic process | GO:0005983 starch catabolic process | ||
GO:0030245 cellulose catabolic process | GO:0030245 cellulose catabolic process | ||
'' | '''''hemicellulose catabolic process''''' | ||
GO:0045493 xylan catabolic process | |||
GO:0046355 mannan catabolic process | |||
'''''xyloglucan catabolic process''''' | |||
GO:0045490 pectin catabolic process | |||
2. Other areas to consider: | |||
Degradation of storage carbohydrate | |||
Degradation of organelle carbohydrate | |||
Degradation of plastids | |||
3. Cross link breaking | |||
backbone | |||
side chain | |||
4. Soluble phenolics |
Latest revision as of 22:29, 24 February 2011
Working group members:
- Biswarup Mukhopadhyay (Lead)
- Adam Book
- Garret Suen
Trudy 2/22/11(excerpts from 1st MENGO workshop)
- General ideas/terms proposed include:
All catabolic-related terms will have corresponding biosynthesis-related terms
Bolded italicised terms are currently missing in the Gene Ontology
GO:0016052 carbohydrate metabolic process GO:0005976 polysaccharide metabolic process GO:0000272 polysaccharide catabolic process GO:0005983 starch catabolic process GO:0030245 cellulose catabolic process hemicellulose catabolic process GO:0045493 xylan catabolic process GO:0046355 mannan catabolic process xyloglucan catabolic process GO:0045490 pectin catabolic process
2. Other areas to consider:
Degradation of storage carbohydrate
Degradation of organelle carbohydrate Degradation of plastids
3. Cross link breaking
backbone side chain
4. Soluble phenolics