Difference between revisions of "MENGO Hydrogen biosynthesis"

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[[Category:Content_MENGO]]
 
Working group
 
Working group
 
*
 
*
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*
 
*
  
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==Trudy_06/23/11==
 +
 +
====GO:XXXXXX146 :hydrogenase mediated hydrogen biosynthesis====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
 +
http://www.fao.org/docrep/w7241e/w7241e0g.htm
 +
[GOC:MENGO_TT]
 +
 +
====GO:XXXXXX146 :regulation of hydrogenase mediated hydrogen biosynthesis====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
 +
http://www.fao.org/docrep/w7241e/w7241e0g.htm
 +
[GOC:MENGO_TT]
 +
 +
 +
====GO:XXXXXX146 :positive regulation of hydrogenase mediated hydrogen biosynthesis====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
 +
http://www.fao.org/docrep/w7241e/w7241e0g.htm
 +
[GOC:MENGO_TT]
 +
 +
====GO:XXXXXX146 :negative regulation of hydrogenase mediated hydrogen biosynthesis====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
http://www.fao.org/docrep/w7241e/w7241e0g.htm
 +
 +
[GOC:MENGO_TT]
 +
 +
====GO:XXXXXX146 :nitrogenase mediated hydrogen biosynthesis====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
 +
http://www.fao.org/docrep/w7241e/w7241e0g.htm
 +
 +
[GOC:MENGO_TT]
 +
 +
====GO:XXXXXX146 :regulation of nitrogenase mediated hydrogen biosynthesis====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
[GOC:MENGO_TT]
 +
 +
====GO:XXXXXX146 :positive regulation of nitrogenase mediated hydrogen biosynthesis====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
 +
[GOC:MENGO_TT]
 +
 +
====GO:XXXXXX146 :negative positive regulation of nitrogenase mediated hydrogen biosynthesis====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
 +
[GOC:MENGO_TT]
 +
 +
 +
====GO:XXXXXX146 bioynthesis of iron molybdenum cofactor of nitrogenase====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
synonym:bioynthesis of FeMoco of nitrogenase
  
 +
PMID:17521738, PMID:17203313,PMID:16893897
 +
 +
[GOC:MENGO_TT]
 +
 +
====GO:XXXXXX146 :Pyruvate fermentation to Hydrogen====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
[GOC:MENGO_TT]
  
==Trudy_06/23/11==
 
  
 
====GO:XXXXXX146 :Pyruvate fermentation to Hydrogen====
 
====GO:XXXXXX146 :Pyruvate fermentation to Hydrogen====
Line 16: Line 124:
 
is_a :  
 
is_a :  
 
synonym: Dark fermentation
 
synonym: Dark fermentation
 +
 +
[GOC:MENGO_TT]
 +
 +
 +
====GO:XXXXXX146 :Regulation of Pyruvate fermentation to Hydrogen====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
synonym: Dark fermentation
 +
[GOC:MENGO_TT]
 +
 +
 +
====GO:XXXXXX146 :Positive regulation of Pyruvate fermentation to Hydrogen====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
synonym: Dark fermentation
 +
[GOC:MENGO_TT]
 +
 +
 +
====GO:XXXXXX146: Negative regulation of Pyruvate fermentation to Hydrogen====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
synonym: Dark fermentation
 +
[GOC:MENGO_TT]
 +
 +
 +
 +
====GO:XXXXXX146: Glycerol fermentation to Hydrogen====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
synonym:
 +
PMID:20615687
 +
Halanaerobium saccharolyticum subsp.saccharolyticum
 +
[GOC:MENGO_TT]
 +
 +
 +
====GO:XXXXXX146 :Regulation of Glycerol fermentation to Hydrogen====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
synonym:
 +
PMID:20615687
 
[GOC:MENGO_TT]
 
[GOC:MENGO_TT]
 +
 +
 +
====GO:XXXXXX146 :Positive regulation of Glycerol fermentation to Hydrogen====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
synonym:
 +
PMID:20615687
 +
[GOC:MENGO_TT]
 +
 +
 +
====GO:XXXXXX146: Negative regulation of Glycerol fermentation to Hydrogen====
 +
 +
namespace: biological_process
 +
 +
def:
 +
 +
is_a :
 +
PMID:20615687
 +
[GOC:MENGO_TT]
 +
 +
  
  
Line 66: Line 259:
  
  
====GO:XXXXXX147 :Hydrogen biosynthesis from formate ====
+
====GO:XXXXXX147 :biosynthesis of formate dehydrogenase complex ====
 +
 
 +
namespace: biological_process
 +
 
 +
def:
 +
 
 +
is_a :
 +
synonyms:biosynthesis of formate-hydrogenlyase complex, biosynthesis of FHL complex, biosynthesis of formate hydrogen lyase complex
 +
 
 +
PMID:1779767
 +
[GOC:MENGO_TT]
 +
 
 +
 
 +
 
 +
====GO:XXXXXX147 :regulation of formate dehydrogenase complex biosynthesis ====
 +
 
 +
namespace: biological_process
 +
 
 +
def:
 +
 
 +
is_a :
 +
synonyms:regulation of  formate-hydrogenlyase complex biosynthesis, regulation of FHL complex biosynthesis, regulation of formate hydrogen lyase complex biosynthesis
 +
 
 +
PMID:1779767
 +
[GOC:MENGO_TT]
 +
 
 +
 
 +
====GO:XXXXXX147 :positive regulation of formate dehydrogenase complex biosynthesis ====
 +
 
 +
namespace: biological_process
 +
 
 +
def:
 +
 
 +
is_a :
 +
synonyms:positive regulation of  formate-hydrogenlyase complex biosynthesis, positive regulation of FHL complex biosynthesis, positive regulation of formate hydrogen lyase complex biosynthesis
 +
 
 +
PMID:1779767
 +
[GOC:MENGO_TT]
 +
 
 +
 
 +
====GO:XXXXXX147 :negative regulation of formate dehydrogenase complex biosynthesis ====
 +
 
 +
namespace: biological_process
 +
 
 +
def:
 +
 
 +
is_a :
 +
synonyms:negative regulation of  formate-hydrogenlyase complex biosynthesis, negative regulation of FHL complex biosynthesis, negative regulation of formate hydrogen lyase complex biosynthesis
 +
 
 +
PMID:1779767
 +
[GOC:MENGO_TT]
 +
 
 +
 
 +
 
 +
====GO:XXXXXX147 :Hydrogen biosynthesis from carbon monoxide ====
  
 
namespace: biological_process
 
namespace: biological_process
Line 73: Line 320:
  
 
is_a :  
 
is_a :  
 +
synonyms: Hydrogen biosynthesis from CO
 +
PMID:1779767
 +
[GOC:MENGO_TT]
 +
 +
 +
====GO:XXXXXX147 :Hydrogen biosynthesis from plastoquinone ====
 +
 +
namespace: biological_process
  
 +
def:
 +
 +
is_a :
 +
synonyms: Hydrogen biosynthesis from CO
 +
PMID:1779767
 
[GOC:MENGO_TT]
 
[GOC:MENGO_TT]
 +
 +
 +
  
  
Line 157: Line 420:
 
[GOC:MENGO_TT]
 
[GOC:MENGO_TT]
  
 +
 +
 +
 +
 +
====GO:XXXXXX14: biosynthesis of H cluster ====
 +
 +
namespace: biological_process
 +
 +
def: The reactions that go into the formation of teh H-cluster complex,  catalytic cofactor comprised of two iron-based clusters connected via a cysteinyl sulfur atom
 +
 +
is_a :
 +
Synonym:
 +
PMID:21673792
 +
[GOC:MENGO_TT]
 +
 +
 +
 +
 +
 +
===CELLULAR COMPONENT===
  
 
====GO:XXXXXX148 :Ni-Fe Hydrogenase complex====
 
====GO:XXXXXX148 :Ni-Fe Hydrogenase complex====
Line 193: Line 476:
 
synonyms: formate-hydrogenlyase complex, FHL complex, formate hydrogen lyase complex
 
synonyms: formate-hydrogenlyase complex, FHL complex, formate hydrogen lyase complex
  
METACYC, PMID:1779767
+
PMID:1779767
 +
 
 +
[GOC:MENGO_TT]
 +
 
 +
 
 +
====GO:XXXXXX14:H cluster complex ====
 +
 
 +
namespace: biological_process
 +
 
 +
def: A catalytic cofactor comprised of two iron-based clusters connected via a cysteinyl sulfur atom
 +
 
 +
is_a :
 +
Synonym:
 +
PMID:21673792
 +
[GOC:MENGO_TT]
 +
 
 +
 
 +
==== GO:0009326: heterocyst====
 +
 
 +
namespace: cellular component
 +
 
 +
def:A differentiated cell that carries out nitrogen fixation, often found in cyanobacteria
 +
 
 +
is_a : GO:0043234 protein complex
  
 +
PMID:16390435
  
 
[GOC:MENGO_TT]
 
[GOC:MENGO_TT]

Latest revision as of 14:58, 27 May 2014

Working group

Contents

Trudy_06/23/11

GO:XXXXXX146 :hydrogenase mediated hydrogen biosynthesis

namespace: biological_process

def:

is_a :

http://www.fao.org/docrep/w7241e/w7241e0g.htm [GOC:MENGO_TT]

GO:XXXXXX146 :regulation of hydrogenase mediated hydrogen biosynthesis

namespace: biological_process

def:

is_a :

http://www.fao.org/docrep/w7241e/w7241e0g.htm [GOC:MENGO_TT]


GO:XXXXXX146 :positive regulation of hydrogenase mediated hydrogen biosynthesis

namespace: biological_process

def:

is_a :

http://www.fao.org/docrep/w7241e/w7241e0g.htm [GOC:MENGO_TT]

GO:XXXXXX146 :negative regulation of hydrogenase mediated hydrogen biosynthesis

namespace: biological_process

def:

http://www.fao.org/docrep/w7241e/w7241e0g.htm

[GOC:MENGO_TT]

GO:XXXXXX146 :nitrogenase mediated hydrogen biosynthesis

namespace: biological_process

def:

is_a :

http://www.fao.org/docrep/w7241e/w7241e0g.htm

[GOC:MENGO_TT]

GO:XXXXXX146 :regulation of nitrogenase mediated hydrogen biosynthesis

namespace: biological_process

def:

is_a : [GOC:MENGO_TT]

GO:XXXXXX146 :positive regulation of nitrogenase mediated hydrogen biosynthesis

namespace: biological_process

def:

is_a :

[GOC:MENGO_TT]

GO:XXXXXX146 :negative positive regulation of nitrogenase mediated hydrogen biosynthesis

namespace: biological_process

def:

is_a :

[GOC:MENGO_TT]


GO:XXXXXX146 bioynthesis of iron molybdenum cofactor of nitrogenase

namespace: biological_process

def:

is_a : synonym:bioynthesis of FeMoco of nitrogenase

PMID:17521738, PMID:17203313,PMID:16893897

[GOC:MENGO_TT]

GO:XXXXXX146 :Pyruvate fermentation to Hydrogen

namespace: biological_process

def:

is_a : [GOC:MENGO_TT]


GO:XXXXXX146 :Pyruvate fermentation to Hydrogen

namespace: biological_process

def:

is_a : synonym: Dark fermentation

[GOC:MENGO_TT]


GO:XXXXXX146 :Regulation of Pyruvate fermentation to Hydrogen

namespace: biological_process

def:

is_a : synonym: Dark fermentation [GOC:MENGO_TT]


GO:XXXXXX146 :Positive regulation of Pyruvate fermentation to Hydrogen

namespace: biological_process

def:

is_a : synonym: Dark fermentation [GOC:MENGO_TT]


GO:XXXXXX146: Negative regulation of Pyruvate fermentation to Hydrogen

namespace: biological_process

def:

is_a : synonym: Dark fermentation [GOC:MENGO_TT]


GO:XXXXXX146: Glycerol fermentation to Hydrogen

namespace: biological_process

def:

is_a : synonym: PMID:20615687 Halanaerobium saccharolyticum subsp.saccharolyticum [GOC:MENGO_TT]


GO:XXXXXX146 :Regulation of Glycerol fermentation to Hydrogen

namespace: biological_process

def:

is_a : synonym: PMID:20615687 [GOC:MENGO_TT]


GO:XXXXXX146 :Positive regulation of Glycerol fermentation to Hydrogen

namespace: biological_process

def:

is_a : synonym: PMID:20615687 [GOC:MENGO_TT]


GO:XXXXXX146: Negative regulation of Glycerol fermentation to Hydrogen

namespace: biological_process

def:

is_a : PMID:20615687 [GOC:MENGO_TT]



GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via acetyl Co-A

namespace: biological_process

def:

is_a :

[GOC:MENGO_TT]



GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via acetoacetyl Co-A

namespace: biological_process

def:

is_a :

[GOC:MENGO_TT]


GO:XXXXXX147 :Pyruvate fermentation to Hydrogen via Butyryl CoA

namespace: biological_process

def:

is_a :

[GOC:MENGO_TT]


GO:XXXXXX147 :Hydrogen biosynthesis from formate

namespace: biological_process

def:

is_a :

[GOC:MENGO_TT]


GO:XXXXXX147 :biosynthesis of formate dehydrogenase complex

namespace: biological_process

def:

is_a : synonyms:biosynthesis of formate-hydrogenlyase complex, biosynthesis of FHL complex, biosynthesis of formate hydrogen lyase complex

PMID:1779767 [GOC:MENGO_TT]


GO:XXXXXX147 :regulation of formate dehydrogenase complex biosynthesis

namespace: biological_process

def:

is_a : synonyms:regulation of formate-hydrogenlyase complex biosynthesis, regulation of FHL complex biosynthesis, regulation of formate hydrogen lyase complex biosynthesis

PMID:1779767 [GOC:MENGO_TT]


GO:XXXXXX147 :positive regulation of formate dehydrogenase complex biosynthesis

namespace: biological_process

def:

is_a : synonyms:positive regulation of formate-hydrogenlyase complex biosynthesis, positive regulation of FHL complex biosynthesis, positive regulation of formate hydrogen lyase complex biosynthesis

PMID:1779767 [GOC:MENGO_TT]


GO:XXXXXX147 :negative regulation of formate dehydrogenase complex biosynthesis

namespace: biological_process

def:

is_a : synonyms:negative regulation of formate-hydrogenlyase complex biosynthesis, negative regulation of FHL complex biosynthesis, negative regulation of formate hydrogen lyase complex biosynthesis

PMID:1779767 [GOC:MENGO_TT]


GO:XXXXXX147 :Hydrogen biosynthesis from carbon monoxide

namespace: biological_process

def:

is_a : synonyms: Hydrogen biosynthesis from CO PMID:1779767 [GOC:MENGO_TT]


GO:XXXXXX147 :Hydrogen biosynthesis from plastoquinone

namespace: biological_process

def:

is_a : synonyms: Hydrogen biosynthesis from CO PMID:1779767 [GOC:MENGO_TT]



GO:XXXXXX147 :Fe-S cluster biosynthesis

namespace: biological_process

def:

is_a : PMID:21393052, PMID:20812788 [GOC:MENGO_TT]



GO:XXXXXX147: Regulation of Fe-S cluster biosynthesis

namespace: biological_process

def:

is_a : PMID:21393052, PMID:20812788 , PMID:18322036

[GOC:MENGO_TT]


GO:XXXXXX147:positive regulation of Fe-S cluster biosynthesis

namespace: biological_process

def:

is_a : PMID:21393052, PMID:20812788 , PMID:18322036

[GOC:MENGO_TT]


GO:XXXXXX147:negative regulation of Fe-S cluster biosynthesis

namespace: biological_process

def:

is_a : PMID:21393052, PMID:20812788 , PMID:18322036

[GOC:MENGO_TT]


GO:XXXXXX147 :Fe-S cluster biosynthesis via iron sulfur cluster pathway

namespace: biological_process

def:

is_a : Synonym: Fe-S cluster biosynthesis via ISC- encoded pathway Iron, Sulfur biosynthesis via ISC- encoded pathway Iron, sulfur biosynthesis via iron sulfur cluster pathway PMID:21393052, PMID:19675643

[GOC:MENGO_TT]


GO:XXXXXX147 :Fe-S cluster biosynthesis via sulfur formation pathway

namespace: biological_process

def:

is_a : Synonym: Fe-S cluster biosynthesis via SUF- pathway Iron, Sulfur biosynthesis via sulfur formation pathway Iron, sulfur biosynthesis via SUF pathway PMID:21393052, PMID:19675643

[GOC:MENGO_TT]



GO:XXXXXX14: biosynthesis of H cluster

namespace: biological_process

def: The reactions that go into the formation of teh H-cluster complex, catalytic cofactor comprised of two iron-based clusters connected via a cysteinyl sulfur atom

is_a : Synonym: PMID:21673792 [GOC:MENGO_TT]



CELLULAR COMPONENT

GO:XXXXXX148 :Ni-Fe Hydrogenase complex

namespace: Cellular component

def:

is_a :

[GOC:MENGO_TT]


GO:XXXXXX148 :Fe-Fe Hydrogenase complex

namespace: cellular component

def:

is_a :

[GOC:MENGO_TT]


GO:0009326: formate dehydrogenase complex

namespace: cellular component

def:An enzyme complex that catalyzes the dehydrogenation of formate to produce carbon dioxide (CO2)

is_a : GO:0043234 protein complex

comment: needs synonyms synonyms: formate-hydrogenlyase complex, FHL complex, formate hydrogen lyase complex

PMID:1779767

[GOC:MENGO_TT]


GO:XXXXXX14:H cluster complex

namespace: biological_process

def: A catalytic cofactor comprised of two iron-based clusters connected via a cysteinyl sulfur atom

is_a : Synonym: PMID:21673792 [GOC:MENGO_TT]


GO:0009326: heterocyst

namespace: cellular component

def:A differentiated cell that carries out nitrogen fixation, often found in cyanobacteria

is_a : GO:0043234 protein complex

PMID:16390435

[GOC:MENGO_TT]